Aliases for OLMALINC Gene

Subcategory (RNA class) for OLMALINC Gene

lncRNA

Number of RNA Genes sources:

4 / 17

Aliases for OLMALINC Gene

  • Oligodendrocyte Maturation-Associated Long Intergenic Non-Coding RNA 2 3 5
  • OLMALINC 2 5 165
  • Oligodendrocyte Maturation-Associated Long Intervening Non-Coding RNA 2 3
  • Long Intergenic Non-Protein Coding RNA 263 2 3
  • Human Islet Long Non Coding RNA 80 2 3
  • HI-LNC80 2 3
  • Chromosome 10 Open Reading Frame 75 2
  • Non-Protein Coding RNA 263 2
  • NONHSAG006678.2 91
  • HSALNG0080104 164
  • HSALNG0080102 164
  • NCRNA00263 3
  • OLMALINCAS 3
  • LINC00263 3
  • BA34D15.5 2
  • C10orf75 3
  • FLJ12974 2

External Ids for OLMALINC Gene

Previous HGNC Symbols for OLMALINC Gene

  • C10orf75
  • NCRNA00263
  • LINC00263

Summaries for OLMALINC Gene

GeneCards Summary for OLMALINC Gene

OLMALINC (Oligodendrocyte Maturation-Associated Long Intergenic Non-Coding RNA) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for OLMALINC Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for OLMALINC Gene

Genomics for OLMALINC Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for OLMALINC Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH10J100369 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.4 +8.9 8932 7 CEBPG SP1 HNRNPL CREB1 GATAD2A ATF7 TEAD4 REST ZNF629 TFE3 lnc-PKD2L1-7 OLMALINC EBAG9P1 SEC31B LZTS2 PHBP9 NDUFB8 SCD ENSG00000231188 MRPL43
GH10J100361 Enhancer 1.1 ENCODE dbSUPER 605.3 +0.1 138 5.2 PRDM10 REST ZNF629 RFX1 IKZF1 ZNF7 JUND RBFOX2 RXRB SP1 OLMALINC PKD2L1 SEC31B OLMALINC-001 lnc-PKD2L1-7 SCD RF00017-777 WNT8B
GH10J100353 Enhancer 0.6 Ensembl dbSUPER 4.8 -9.4 -9389 2 RBFOX2 POLR2A ZNF18 SMAD5 SUPT5H PAF1 PKD2L1 SEC31B OLMALINC MN309198 SCD RF00017-777 WNT8B
GH10J100750 Enhancer 0.7 Ensembl dbSUPER 4.3 +384.6 384611 2 TEAD4 PRDM1 POLR2A EZH2 CBX2 ZFP69B CBX8 GLIS1 GLIS2 MRPL43 OLMALINC PAX2 lnc-SLF2-3 SLF2
GH10J100376 Promoter/Enhancer 0.9 Ensembl dbSUPER 0.4 +13.0 13011 0.4 NR2C1 HDAC1 SOX6 GATAD2B NR2F1 NR2F6 TAL1 HDAC2 KDM1A SMARCE1 piR-56133-034 SCD ENSG00000231188 SEC31B NDUFB8 ENSG00000255339 HIF1AN lnc-PKD2L1-7 OLMALINC RF00017-777
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OLMALINC on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for OLMALINC Gene

Genomic Locations for OLMALINC Gene
chr10:100,363,590-100,454,043
(GRCh38/hg38)
Size:
90,454 bases
Orientation:
Plus strand
chr10:102,133,333-102,148,111
(GRCh37/hg19)
Size:
14,779 bases
Orientation:
Plus strand

Genomic View for OLMALINC Gene

Genes around OLMALINC on UCSC Golden Path with GeneCards custom track
OLMALINC in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
OLMALINC Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OLMALINC Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OLMALINC Gene

Proteins for OLMALINC Gene

Post-translational modifications for OLMALINC Gene

No Post-translational modifications

No data available for DME Specific Peptides for OLMALINC Gene

Domains & Families for OLMALINC Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for OLMALINC Gene

Function for OLMALINC Gene

genes like me logo Genes that share phenotypes with OLMALINC: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OLMALINC Gene

Localization for OLMALINC Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OLMALINC gene
Compartment Confidence
nucleus 1
endoplasmic reticulum 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OLMALINC Gene

Pathways & Interactions for OLMALINC Gene

PathCards logo

SuperPathways for OLMALINC Gene

No Data Available

Gene Ontology (GO) - Biological Process for OLMALINC Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for OLMALINC Gene

Drugs & Compounds for OLMALINC Gene

No Compound Related Data Available

Transcripts for OLMALINC Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for OLMALINC Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00007C64D6_9606 lncRNA 2551 3

Ensembl: ENST00000454935 (view in UCSC) ,

LNCipedia: OLMALINC:18,

NONCODE: NONHSAT015970.2,

URS0000BC63E9_9606 lncRNA 1872 3

Ensembl: ENST00000608396 (view in UCSC) ,

LncBook: HSALNT0167054,

LNCipedia: OLMALINC:29,

URS0000BC506D_9606 lncRNA 1184 3

Ensembl: ENST00000641708 (view in UCSC) ,

LncBook: HSALNT0167053,

LNCipedia: OLMALINC:28,

URS0000BC498D_9606 lncRNA 1180 3

Ensembl: ENST00000641571 (view in UCSC) ,

LncBook: HSALNT0167055,

LNCipedia: OLMALINC:31,

URS0000BC7E85_9606 lncRNA 3779 2

Ensembl: ENST00000641087 (view in UCSC) ,

LNCipedia: OLMALINC:32,

OLMALINC in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for OLMALINC Gene

5 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for OLMALINC Gene

No ASD Table

Relevant External Links for OLMALINC Gene

GeneLoc Exon Structure for
OLMALINC

Expression for OLMALINC Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for OLMALINC Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for OLMALINC

genes like me logo Genes that share expression patterns with OLMALINC: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OLMALINC Gene

Orthologs for OLMALINC Gene

Evolution for OLMALINC Gene

ENSEMBL:
Gene Tree for OLMALINC (if available)
TreeFam:
Gene Tree for OLMALINC (if available)

No data available for Orthologs for OLMALINC Gene

Paralogs for OLMALINC Gene

No data available for Paralogs for OLMALINC Gene

Variants for OLMALINC Gene

Additional dbSNP identifiers (rs#s) for OLMALINC Gene

Structural Variations from Database of Genomic Variants (DGV) for OLMALINC Gene

Variant ID Type Subtype PubMed ID
nsv1144513 CNV deletion 24896259
nsv831961 CNV loss 17160897

Additional Variant Information for OLMALINC Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OLMALINC

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for OLMALINC Gene

Disorders for OLMALINC Gene

No disorders were found for OLMALINC Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OLMALINC Gene

Publications for OLMALINC Gene

  1. CRISPRi-based genome-scale identification of functional long noncoding RNA loci in human cells. (PMID: 27980086) Liu SJ … Lim DA (Science (New York, N.Y.) 2017) 2 3
  2. High expression of long intervening non-coding RNA OLMALINC in the human cortical white matter is associated with regulation of oligodendrocyte maturation. (PMID: 25575711) Mills JD … Janitz M (Molecular brain 2015) 2 3
  3. Human β cell transcriptome analysis uncovers lncRNAs that are tissue-specific, dynamically regulated, and abnormally expressed in type 2 diabetes. (PMID: 23040067) Morán I … Ferrer J (Cell metabolism 2012) 2 3
  4. Identification of intrahepatic cholangiocarcinoma related genes by comparison with normal liver tissues using expressed sequence tags. (PMID: 16712791) Wang AG … Kim NS (Biochemical and biophysical research communications 2006) 3
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3

Products for OLMALINC Gene

Sources for OLMALINC Gene