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Aliases for OLFM5P Gene

Aliases for OLFM5P Gene

  • Olfactomedin Family Member 5, Pseudogene 2 3 5

External Ids for OLFM5P Gene

Previous GeneCards Identifiers for OLFM5P Gene

  • GC11M005584
  • GC11M005609
  • GC11M005590
  • GC11M005616

Summaries for OLFM5P Gene

GeneCards Summary for OLFM5P Gene

OLFM5P (Olfactomedin Family Member 5, Pseudogene) is a Pseudogene.

Additional gene information for OLFM5P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OLFM5P Gene

Genomics for OLFM5P Gene

GeneHancer (GH) Regulatory Elements for OLFM5P Gene

Promoters and enhancers for OLFM5P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J005550 Enhancer 0.8 Ensembl ENCODE 5.4 -26.0 -25957 1.1 SMARCA4 DPF2 FOS FOSL1 CUX1 FOSL2 JUN JUND SMARCE1 OR52H2P HBE1 HBG2 OR51B5 TRIM6 OR52D1 OR51I2 OLFM5P OR52H1 ENSG00000239920
GH11J005556 Enhancer 0.5 Ensembl 6.2 -31.8 -31846 0.8 IKZF1 HDAC1 MNT ZNF766 OR52B5P HBE1 HBG2 OR51B5 TRIM6 OR52D1 OR51I2 OLFM5P UBQLNL OR52H2P
GH11J006273 Enhancer 0.2 Ensembl 4.4 -749.9 -749946 3.8 CAVIN3 FAM160A2 C11orf42 OR52W1 OR56A1 OR52B2 OLFM5P GC11M006274 GC11M006277 CCKBR
GH11J005518 Enhancer 0.4 FANTOM5 0.4 +6.4 6415 0.1 ATF2 UBQLNL UBQLN3 OLFM5P ENSG00000239920
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OLFM5P on UCSC Golden Path with GeneCards custom track

Genomic Locations for OLFM5P Gene

Genomic Locations for OLFM5P Gene
chr11:5,514,393-5,524,955
(GRCh38/hg38)
Size:
10,563 bases
Orientation:
Minus strand

Genomic View for OLFM5P Gene

Genes around OLFM5P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OLFM5P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OLFM5P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OLFM5P Gene

Proteins for OLFM5P Gene

Post-translational modifications for OLFM5P Gene

No Post-translational modifications

No data available for DME Specific Peptides for OLFM5P Gene

Domains & Families for OLFM5P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OLFM5P Gene

Function for OLFM5P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OLFM5P Gene

Localization for OLFM5P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OLFM5P Gene

Pathways & Interactions for OLFM5P Gene

PathCards logo

SuperPathways for OLFM5P Gene

No Data Available

Interacting Proteins for OLFM5P Gene

Gene Ontology (GO) - Biological Process for OLFM5P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OLFM5P Gene

Drugs & Compounds for OLFM5P Gene

No Compound Related Data Available

Transcripts for OLFM5P Gene

mRNA/cDNA for OLFM5P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for OLFM5P Gene

No ASD Table

Relevant External Links for OLFM5P Gene

GeneLoc Exon Structure for
OLFM5P
ECgene alternative splicing isoforms for
OLFM5P

Expression for OLFM5P Gene

NURSA nuclear receptor signaling pathways regulating expression of OLFM5P Gene:

OLFM5P
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OLFM5P Gene

Orthologs for OLFM5P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for OLFM5P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC466384 34
  • 98.61 (n)
Species where no ortholog for OLFM5P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OLFM5P Gene

ENSEMBL:
Gene Tree for OLFM5P (if available)
TreeFam:
Gene Tree for OLFM5P (if available)

Paralogs for OLFM5P Gene

No data available for Paralogs for OLFM5P Gene

Variants for OLFM5P Gene

Sequence variations from dbSNP and Humsavar for OLFM5P Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000159289 -- 5,521,536(-) C/A/T intron_variant
rs1000273536 -- 5,521,200(-) C/G/T intron_variant
rs1001256548 -- 5,520,749(-) C/T intron_variant
rs1001784487 -- 5,521,621(-) C/T non_coding_transcript_variant
rs1001934242 -- 5,523,331(-) C/A upstream_transcript_variant

Additional Variant Information for OLFM5P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OLFM5P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for OLFM5P Gene

Disorders for OLFM5P Gene

Additional Disease Information for OLFM5P

No disorders were found for OLFM5P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OLFM5P Gene

Publications for OLFM5P Gene

No publications were found for OLFM5P Gene.

No data available for External Links for OLFM5P Gene

Products for OLFM5P Gene

Sources for OLFM5P Gene

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