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Aliases for OGFR-AS1 Gene

Subcategory (RNA class) for OGFR-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for OGFR-AS1 Gene

  • OGFR Antisense RNA 1 2 3 5
  • OGFR Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for OGFR-AS1 Gene

Previous GeneCards Identifiers for OGFR-AS1 Gene

  • GC20M061432

Summaries for OGFR-AS1 Gene

GeneCards Summary for OGFR-AS1 Gene

OGFR-AS1 (OGFR Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for OGFR-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OGFR-AS1 Gene

Genomics for OGFR-AS1 Gene

GeneHancer (GH) Regulatory Elements for OGFR-AS1 Gene

Promoters and enhancers for OGFR-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J062803 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 600.7 +0.0 18 3.7 ZFX ELF3 ZNF148 NKRF POLR2A CEBPG ZNF687 AHR TFE3 SP1 OGFR OGFR-AS1 MRGBP
GH20J062641 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 11.3 +160.2 160205 8 ZFX ELF3 NKRF POLR2A ZNF687 AHR NCOA3 MYC TFE3 SP7 SLCO4A1 MIR1-1HG-AS1 MRGBP TAF4 GMEB2 SLCO4A1-AS1 OGFR OGFR-AS1 MIR1-1 MIR1-1HG
GH20J062649 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 11.3 +153.5 153495 4.7 MTA3 ZFX SP1 ELF3 MNT NKRF CEBPG RERE ZNF687 AHR ENSG00000277496 ENSG00000276317 OGFR YTHDF1 OGFR-AS1 MTG2 MIR1-1 MIR1-1HG MIR1-1HG-AS1 DIDO1
GH20J062708 Promoter/Enhancer 2 EPDnew Ensembl ENCODE dbSUPER 11.5 +95.1 95055 5.1 ZFX NFIB BACH1 GLIS2 GMEB1 ZBTB8A ZBTB33 PRDM10 ZIC2 ATF1 NTSR1 ENSG00000223669 OGFR OGFR-AS1 SLCO4A1-AS1 SLCO4A1 MRGBP ENSG00000229882 ENSG00000232121 MIR133A2
GH20J062860 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 11.1 -56.0 -55967 3.1 ZNF652 SP1 ZFX ELF3 ZKSCAN8 MNT CBFA2T2 ZNF148 POLR2A MLLT1 TCFL5 LOC105372717 OGFR OGFR-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OGFR-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for OGFR-AS1 Gene

Genomic Locations for OGFR-AS1 Gene
chr20:62,800,627-62,805,587
(GRCh38/hg38)
Size:
4,961 bases
Orientation:
Minus strand
chr20:61,431,979-61,436,939
(GRCh37/hg19)
Size:
4,961 bases
Orientation:
Minus strand

Genomic View for OGFR-AS1 Gene

Genes around OGFR-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OGFR-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OGFR-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OGFR-AS1 Gene

Proteins for OGFR-AS1 Gene

Post-translational modifications for OGFR-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OGFR-AS1 Gene

Domains & Families for OGFR-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OGFR-AS1 Gene

Function for OGFR-AS1 Gene

Phenotypes From GWAS Catalog for OGFR-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OGFR-AS1 Gene

Localization for OGFR-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OGFR-AS1 Gene

Pathways & Interactions for OGFR-AS1 Gene

PathCards logo

SuperPathways for OGFR-AS1 Gene

No Data Available

Interacting Proteins for OGFR-AS1 Gene

Gene Ontology (GO) - Biological Process for OGFR-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OGFR-AS1 Gene

Drugs & Compounds for OGFR-AS1 Gene

No Compound Related Data Available

Transcripts for OGFR-AS1 Gene

mRNA/cDNA for OGFR-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(2) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for OGFR-AS1 Gene

No ASD Table

Relevant External Links for OGFR-AS1 Gene

GeneLoc Exon Structure for
OGFR-AS1
ECgene alternative splicing isoforms for
OGFR-AS1

Expression for OGFR-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for OGFR-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for OGFR-AS1 Gene

This gene is overexpressed in Liver (x6.3).
genes like me logo Genes that share expression patterns with OGFR-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for OGFR-AS1 Gene

Orthologs for OGFR-AS1 Gene

Evolution for OGFR-AS1 Gene

ENSEMBL:
Gene Tree for OGFR-AS1 (if available)
TreeFam:
Gene Tree for OGFR-AS1 (if available)

No data available for Orthologs for OGFR-AS1 Gene

Paralogs for OGFR-AS1 Gene

No data available for Paralogs for OGFR-AS1 Gene

Variants for OGFR-AS1 Gene

Sequence variations from dbSNP and Humsavar for OGFR-AS1 Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000031625 -- 62,802,126(-) C/G intron_variant
rs1000234821 -- 62,807,370(-) C/T upstream_transcript_variant
rs1000523811 -- 62,806,246(-) G/A/C upstream_transcript_variant
rs1000979370 -- 62,805,970(-) C/G/T upstream_transcript_variant
rs1000983980 -- 62,805,827(-) T/C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for OGFR-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1073081 CNV deletion 25765185
nsv1144941 CNV deletion 24896259
nsv428380 CNV loss 18775914
nsv459065 CNV gain 19166990
nsv470558 CNV loss 18288195
nsv586496 CNV gain 21841781
nsv828792 CNV loss 20364138
nsv828793 CNV gain 20364138
nsv834027 CNV loss 17160897
nsv953302 CNV deletion 24416366
nsv9825 CNV gain 18304495

Additional Variant Information for OGFR-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OGFR-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for OGFR-AS1 Gene

Disorders for OGFR-AS1 Gene

Additional Disease Information for OGFR-AS1

No disorders were found for OGFR-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OGFR-AS1 Gene

Publications for OGFR-AS1 Gene

  1. Normalization and subtraction: two approaches to facilitate gene discovery. (PMID: 8889548) Bonaldo MF … Soares MB (Genome research 1996) 3 58

Products for OGFR-AS1 Gene

Sources for OGFR-AS1 Gene

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