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Aliases for OBSCN-AS1 Gene

Subcategory (RNA class) for OBSCN-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for OBSCN-AS1 Gene

  • OBSCN Antisense RNA 1 2 3 4 5
  • C1orf145 3 4
  • Putative Uncharacterized Protein OBSCN-AS1 4
  • Chromosome 1 Open Reading Frame 145 2
  • OBSCN Antisense Gene Protein 1 4

External Ids for OBSCN-AS1 Gene

Previous HGNC Symbols for OBSCN-AS1 Gene

  • C1orf145

Summaries for OBSCN-AS1 Gene

GeneCards Summary for OBSCN-AS1 Gene

OBSCN-AS1 (OBSCN Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for OBSCN-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for OBSCN-AS1 Gene

Genomics for OBSCN-AS1 Gene

GeneHancer (GH) Regulatory Elements for OBSCN-AS1 Gene

Promoters and enhancers for OBSCN-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J228212 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 557.2 -1.3 -1319 4.8 ZNF133 MLLT1 L3MBTL2 ZSCAN21 MCM2 SP1 MTA1 KLF14 CREM MYC OBSCN-AS1 PIR37830 OBSCN ZNF678 C1orf35 CICP26 RPL23AP15 HIST3H2A HIST3H2BB HIST3H3
GH01J228137 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 16.6 +71.6 71599 8.8 DACH1 HDGF FOXA1 ZNF473 SP1 MNT ZFX CBFA2T2 SPI1 HCFC1 GUK1 OBSCN CICP26 ENSG00000269890 CDC42BPA ZNF678 OBSCN-AS1 C1orf35 FAM96AP2 MRPL55
GH01J227942 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 12.9 +267.9 267947 6 RAD21 L3MBTL2 PRDM1 MCM2 YY1 KLF14 ZBTB7A ZNF680 CREB1 POLR2A GC01P227947 WNT9A OBSCN-AS1 WNT3A OBSCN IBA57 ENSG00000269934 MRPL55 MIR5008
GH01J228081 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 7.3 +127.1 127109 10.7 SUZ12 SPI1 NR2F6 SP1 MNT ZFX CBFA2T2 ZNF133 HCFC1 MLLT1 ARF1 CICP26 ENSG00000269890 ZNF678 C1orf35 OBSCN CDC42BPA WNT3A ENSG00000269934 OBSCN-AS1
GH01J227933 Enhancer 1.3 Ensembl ENCODE dbSUPER 14.2 +278.7 278666 2.6 ZBTB33 ZNF473 ZNF174 ZSCAN21 MAFK TRIM24 KLF14 ZNF300 CREB1 ZIC2 ZNF678 CICP26 OBSCN OBSCN-AS1 C1orf35 JMJD4 CDC42BPA HIST3H3 MIR5008 WNT9A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around OBSCN-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for OBSCN-AS1 Gene

Genomic Locations for OBSCN-AS1 Gene
chr1:228,203,506-228,213,664
(GRCh38/hg38)
Size:
10,159 bases
Orientation:
Minus strand
chr1:228,391,207-228,401,365
(GRCh37/hg19)
Size:
10,159 bases
Orientation:
Minus strand

Genomic View for OBSCN-AS1 Gene

Genes around OBSCN-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
OBSCN-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for OBSCN-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for OBSCN-AS1 Gene

Proteins for OBSCN-AS1 Gene

  • Protein details for OBSCN-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q96MR7-OBAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein OBSCN-AS1
    Protein Accession:
    Q96MR7
    Secondary Accessions:
    • Q5T438
    • Q8N372

    Protein attributes for OBSCN-AS1 Gene

    Size:
    158 amino acids
    Molecular mass:
    17524 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for OBSCN-AS1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for OBSCN-AS1 Gene

Post-translational modifications for OBSCN-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for OBSCN-AS1 Gene

Domains & Families for OBSCN-AS1 Gene

Gene Families for OBSCN-AS1 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for OBSCN-AS1 Gene

ProtoNet:

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with OBSCN-AS1: view

No data available for Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for OBSCN-AS1 Gene

Function for OBSCN-AS1 Gene

Phenotypes From GWAS Catalog for OBSCN-AS1 Gene

Animal Model Products

CRISPR Products

Clone Products

  • Applied Biological Materials (abm): Clones for OBSCN-AS1 - Now 50% OFF >
  • * OBSCN-AS1 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
  • * OBSCN-AS1 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for OBSCN-AS1 Gene

Localization for OBSCN-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for OBSCN-AS1 gene
Compartment Confidence
nucleus 3
mitochondrion 2
extracellular 1
peroxisome 1
cytosol 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for OBSCN-AS1 Gene

Pathways & Interactions for OBSCN-AS1 Gene

SuperPathways for OBSCN-AS1 Gene

No Data Available

Interacting Proteins for OBSCN-AS1 Gene

Gene Ontology (GO) - Biological Process for OBSCN-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for OBSCN-AS1 Gene

Drugs & Compounds for OBSCN-AS1 Gene

No Compound Related Data Available

Transcripts for OBSCN-AS1 Gene

mRNA/cDNA for OBSCN-AS1 Gene

(1) REFSEQ mRNAs :
(2) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(5) RNA Central transcripts :

CRISPR Products

Clone Products

  • Applied Biological Materials (abm): Clones for OBSCN-AS1 - Now 50% OFF >
  • * OBSCN-AS1 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
  • * OBSCN-AS1 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All

Alternative Splicing Database (ASD) splice patterns (SP) for OBSCN-AS1 Gene

No ASD Table

Relevant External Links for OBSCN-AS1 Gene

GeneLoc Exon Structure for
OBSCN-AS1
ECgene alternative splicing isoforms for
OBSCN-AS1

Expression for OBSCN-AS1 Gene

NURSA nuclear receptor signaling pathways regulating expression of OBSCN-AS1 Gene:

OBSCN-AS1

Evidence on tissue expression from TISSUES for OBSCN-AS1 Gene

  • Nervous system(2)
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for OBSCN-AS1 Gene

Orthologs for OBSCN-AS1 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for OBSCN-AS1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia C1orf145 35
  • 100 (a)
OneToOne
Species where no ortholog for OBSCN-AS1 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for OBSCN-AS1 Gene

ENSEMBL:
Gene Tree for OBSCN-AS1 (if available)
TreeFam:
Gene Tree for OBSCN-AS1 (if available)

Paralogs for OBSCN-AS1 Gene

No data available for Paralogs for OBSCN-AS1 Gene

Variants for OBSCN-AS1 Gene

Sequence variations from dbSNP and Humsavar for OBSCN-AS1 Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs199979779 uncertain-significance, Inborn genetic diseases 228,212,510(-) G/C intron_variant
rs191837710 uncertain-significance, not provided 228,211,818(-) T/A intron_variant
rs1000274958 -- 228,210,004(-) G/A intron_variant
rs1000307578 -- 228,210,380(-) A/C/T intron_variant
rs1000575751 -- 228,215,630(-) C/G upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for OBSCN-AS1 Gene

Variant ID Type Subtype PubMed ID
esv32853 CNV gain 17666407
nsv1069355 CNV deletion 25765185
nsv1143478 CNV deletion 24896259
nsv1160102 CNV deletion 26073780
nsv474639 CNV novel sequence insertion 20440878
nsv523935 CNV loss 19592680
nsv826908 CNV gain 20364138
nsv827019 CNV loss 20364138
nsv952138 CNV deletion 24416366

Variation tolerance for OBSCN-AS1 Gene

Gene Damage Index Score: 3.74; 57.75% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for OBSCN-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
OBSCN-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for OBSCN-AS1 Gene

Disorders for OBSCN-AS1 Gene

No disorders were found for OBSCN-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for OBSCN-AS1 Gene

Publications for OBSCN-AS1 Gene

  1. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 3 4 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58
  5. Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. (PMID: 10737800) Dias Neto E … Simpson AJ (Proceedings of the National Academy of Sciences of the United States of America 2000) 3 58

Products for OBSCN-AS1 Gene

Sources for OBSCN-AS1 Gene

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