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Aliases for NUP62CL Gene

Aliases for NUP62CL Gene

  • Nucleoporin 62 C-Terminal Like 2 3 5
  • Nucleoporin-62 C-Terminal-Like Protein 3 4
  • Nucleoporin 62kDa C-Terminal Like 2 3
  • NUP62L 4

External Ids for NUP62CL Gene

Previous GeneCards Identifiers for NUP62CL Gene

  • GC0XM106253
  • GC0XM106366
  • GC0XM095994

Summaries for NUP62CL Gene

Entrez Gene Summary for NUP62CL Gene

  • This gene encodes a protein containing a domain found in nucleoporins which are glycoproteins found in nuclear pore complexes. Alternative splicing results in multiple transcript variants. [provided by RefSeq, Sep 2011]

GeneCards Summary for NUP62CL Gene

NUP62CL (Nucleoporin 62 C-Terminal Like) is a Protein Coding gene. Gene Ontology (GO) annotations related to this gene include structural constituent of nuclear pore. An important paralog of this gene is NUP62.

Additional gene information for NUP62CL Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUP62CL Gene

Genomics for NUP62CL Gene

GeneHancer (GH) Regulatory Elements for NUP62CL Gene

Promoters and enhancers for NUP62CL Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ107672 Promoter/Enhancer 2.1 EPDnew FANTOM5 ENCODE dbSUPER 600 -470.0 -469959 7.7 SP1 ZFX CTCF GTF2F1 ZNF687 ZSCAN21 MYC ZBTB7A YY1 SP7 GC0XM107676 NUP62CL TSC22D3 RBM41 MORC4 RNF128 GC0XM107673
GH0XJ107204 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 600.7 +0.8 840 3.2 ZFX CC2D1A ZNF148 MLLT1 GTF2F1 CSDE1 SP1 PRDM1 SMARCA4 GMEB1 NUP62CL PIH1D3 RBM41 MORC4 MYCLP1 ENSG00000199832
GH0XJ107134 Enhancer 0.8 ENCODE 12.6 +70.0 70021 3.4 ZNF652 GTF2F1 MAFK TRIM24 EGR1 SMARCA4 DPF2 ZNF512 CEBPA GTF2E2 NUP62CL PIH1D3 FRMPD3 MYCLP1 ENSG00000213569 GC0XM107132
GH0XJ107117 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 0.2 +88.1 88061 2.4 ZFX SIX5 MAFK CREM MLLT1 POLR2A ZBTB8A RFX1 ZNF600 PRDM10 RBM41 FRMPD3 MYCLP1 RNF128 PIR50761 NUP62CL
GH0XJ107154 Enhancer 0.8 ENCODE 0.2 +51.2 51249 1.4 KLF14 EGR1 ZNF692 ZBTB20 MGA ZSCAN5C MTA3 POLR2A OSR2 ZBTB26 RBM41 FRMPD3 MYCLP1 GC0XM107132 GC0XP107200 GC0XP107201 NUP62CL
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NUP62CL on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the NUP62CL gene promoter:
  • AML1a
  • Cdc5
  • E47
  • E4BP4
  • Hand1
  • Hlf
  • STAT5B
  • TBP
  • YY1

Genomic Locations for NUP62CL Gene

Genomic Locations for NUP62CL Gene
chrX:107,119,537-107,206,440
(GRCh38/hg38)
Size:
86,904 bases
Orientation:
Minus strand
chrX:106,366,657-106,449,670
(GRCh37/hg19)
Size:
83,014 bases
Orientation:
Minus strand

Genomic View for NUP62CL Gene

Genes around NUP62CL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NUP62CL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NUP62CL Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUP62CL Gene

Proteins for NUP62CL Gene

  • Protein details for NUP62CL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9H1M0-N62CL_HUMAN
    Recommended name:
    Nucleoporin-62 C-terminal-like protein
    Protein Accession:
    Q9H1M0
    Secondary Accessions:
    • D3DUX4
    • Q8WVL6
    • Q9NXP2

    Protein attributes for NUP62CL Gene

    Size:
    184 amino acids
    Molecular mass:
    20837 Da
    Quaternary structure:
    No Data Available

    Alternative splice isoforms for NUP62CL Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NUP62CL Gene

Post-translational modifications for NUP62CL Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NUP62CL Gene

No data available for DME Specific Peptides for NUP62CL Gene

Domains & Families for NUP62CL Gene

Gene Families for NUP62CL Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Protein Domains for NUP62CL Gene

InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for NUP62CL Gene

GenScript: Design optimal peptide antigens:
  • Nucleoporin-62 C-terminal-like protein (N62CL_HUMAN)
  • Nucleoporin 62kDa C-terminal like (Q5JSN6_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q9H1M0

UniProtKB/Swiss-Prot:

N62CL_HUMAN :
  • Belongs to the nucleoporin NSP1/NUP62 family.
Family:
  • Belongs to the nucleoporin NSP1/NUP62 family.
genes like me logo Genes that share domains with NUP62CL: view

Function for NUP62CL Gene

Phenotypes From GWAS Catalog for NUP62CL Gene

Gene Ontology (GO) - Molecular Function for NUP62CL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 16189514
GO:0017056 structural constituent of nuclear pore IEA --
genes like me logo Genes that share ontologies with NUP62CL: view

Phenotypes for NUP62CL Gene

genes like me logo Genes that share phenotypes with NUP62CL: view

Animal Model Products

CRISPR Products

miRNA for NUP62CL Gene

miRTarBase miRNAs that target NUP62CL

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for NUP62CL

Clone Products

  • Applied Biological Materials (abm): Clones for NUP62CL - Now 50% OFF >
  • * NUP62CL as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
  • * NUP62CL tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , Transcription Factor Targets and HOMER Transcription for NUP62CL Gene

Localization for NUP62CL Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NUP62CL gene
Compartment Confidence
cytosol 3
mitochondrion 2
nucleus 2
extracellular 0
peroxisome 0

Gene Ontology (GO) - Cellular Components for NUP62CL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005643 nuclear pore IEA --
genes like me logo Genes that share ontologies with NUP62CL: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from the Human Protein Atlas (HPA) for NUP62CL Gene

Pathways & Interactions for NUP62CL Gene

PathCards logo

SuperPathways for NUP62CL Gene

No Data Available

Gene Ontology (GO) - Biological Process for NUP62CL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006913 nucleocytoplasmic transport IEA --
GO:0015031 protein transport IEA --
genes like me logo Genes that share ontologies with NUP62CL: view

No data available for Pathways by source and SIGNOR curated interactions for NUP62CL Gene

Drugs & Compounds for NUP62CL Gene

No Compound Related Data Available

Transcripts for NUP62CL Gene

mRNA/cDNA for NUP62CL Gene

(1) REFSEQ mRNAs :
(9) Additional mRNA sequences :
(20) Selected AceView cDNA sequences:
(4) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Unigene Clusters for NUP62CL Gene

Nucleoporin 62kDa C-terminal like:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for NUP62CL

Clone Products

  • Applied Biological Materials (abm): Clones for NUP62CL - Now 50% OFF >
  • * NUP62CL as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
  • * NUP62CL tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All

Alternative Splicing Database (ASD) splice patterns (SP) for NUP62CL Gene

ExUns: 1 ^ 2 ^ 3 ^ 4 ^ 5 ^ 6 ^ 7 ^ 8 ^ 9
SP1:
SP2: - -

Relevant External Links for NUP62CL Gene

GeneLoc Exon Structure for
NUP62CL
ECgene alternative splicing isoforms for
NUP62CL

Expression for NUP62CL Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NUP62CL Gene

mRNA differential expression in normal tissues according to GTEx for NUP62CL Gene

This gene is overexpressed in Testis (x7.8) and Adrenal Gland (x4.5).

NURSA nuclear receptor signaling pathways regulating expression of NUP62CL Gene:

NUP62CL

SOURCE GeneReport for Unigene cluster for NUP62CL Gene:

Hs.163629

Evidence on tissue expression from TISSUES for NUP62CL Gene

  • Intestine(4.2)
  • Bone marrow(4)
  • Lung(4)
genes like me logo Genes that share expression patterns with NUP62CL: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for NUP62CL Gene

Orthologs for NUP62CL Gene

This gene was present in the common ancestor of animals and fungi.

Orthologs for NUP62CL Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NUP62CL 35 34
  • 99.28 (n)
OneToOne
mouse
(Mus musculus)
Mammalia Nup62cl 35
  • 30 (a)
OneToOne
dog
(Canis familiaris)
Mammalia NUP62CL 35
  • 21 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia -- 35
  • 19 (a)
OneToMany
oppossum
(Monodelphis domestica)
Mammalia -- 35
  • 15 (a)
ManyToMany
-- 35
  • 12 (a)
ManyToMany
chicken
(Gallus gallus)
Aves -- 35
  • 19 (a)
OneToMany
lizard
(Anolis carolinensis)
Reptilia -- 35
  • 16 (a)
OneToMany
zebrafish
(Danio rerio)
Actinopterygii nup62l 35
  • 18 (a)
OneToMany
fruit fly
(Drosophila melanogaster)
Insecta Nup62 35
  • 15 (a)
OneToMany
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes NSP1 35
  • 2 (a)
ManyToMany
NUP1 35
  • 1 (a)
ManyToMany
sea squirt
(Ciona savignyi)
Ascidiacea -- 35
  • 18 (a)
OneToMany
Species where no ortholog for NUP62CL was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NUP62CL Gene

ENSEMBL:
Gene Tree for NUP62CL (if available)
TreeFam:
Gene Tree for NUP62CL (if available)
Aminode:
Evolutionary constrained regions (ECRs) for NUP62CL: view image

Paralogs for NUP62CL Gene

Paralogs for NUP62CL Gene

(1) SIMAP similar genes for NUP62CL Gene using alignment to 3 proteins:

  • N62CL_HUMAN
  • H0Y6X7_HUMAN
  • Q5JSN5_HUMAN
genes like me logo Genes that share paralogs with NUP62CL: view

Variants for NUP62CL Gene

Sequence variations from dbSNP and Humsavar for NUP62CL Gene

SNP ID Clin Chr 0X pos Variation AA Info Type
rs1000023506 -- 107,197,931(-) T/C intron_variant
rs1000086303 -- 107,152,778(-) A/T intron_variant
rs1000134532 -- 107,186,727(-) G/A intron_variant
rs1000219048 -- 107,138,513(-) G/A intron_variant
rs1000256268 -- 107,195,193(-) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NUP62CL Gene

Variant ID Type Subtype PubMed ID
dgv2357e212 CNV loss 25503493
dgv4271n106 CNV duplication 24896259
esv1568973 CNV insertion 17803354
esv2740376 CNV deletion 23290073
esv2752312 CNV gain 17911159
nsv1153406 CNV duplication 26484159
nsv519484 CNV gain 19592680
nsv7027 CNV insertion 18451855

Variation tolerance for NUP62CL Gene

Residual Variation Intolerance Score: 61.7% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for NUP62CL Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NUP62CL

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NUP62CL Gene

Disorders for NUP62CL Gene

Additional Disease Information for NUP62CL

No disorders were found for NUP62CL Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NUP62CL Gene

Publications for NUP62CL Gene

  1. The DNA sequence of the human X chromosome. (PMID: 15772651) Ross MT … Bentley DR (Nature 2005) 3 4 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58
  5. Architecture of the human interactome defines protein communities and disease networks. (PMID: 28514442) Huttlin EL … Harper JW (Nature 2017) 3 58

Products for NUP62CL Gene

Sources for NUP62CL Gene

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