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Aliases for NUCB1-AS1 Gene

Subcategory (RNA class) for NUCB1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for NUCB1-AS1 Gene

  • NUCB1 Antisense RNA 1 2 3 5
  • NUCB1 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for NUCB1-AS1 Gene

Previous GeneCards Identifiers for NUCB1-AS1 Gene

  • GC19M049415

Summaries for NUCB1-AS1 Gene

GeneCards Summary for NUCB1-AS1 Gene

NUCB1-AS1 (NUCB1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NUCB1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUCB1-AS1 Gene

Genomics for NUCB1-AS1 Gene

GeneHancer (GH) Regulatory Elements for NUCB1-AS1 Gene

Promoters and enhancers for NUCB1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J048918 Enhancer 0.8 ENCODE 600.7 0.0 -48 0.2 SIX5 ZNF148 CREM GMEB1 IKZF1 ATF1 ZNF143 PKNOX1 HDAC1 RFX1 NUCB1-AS1 GC19M048923 NUCB1
GH19J048958 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 11.6 -45.1 -45138 10.2 MTA3 ZNF652 SP1 ZFX CC2D1A ELF3 SIX5 ZNF148 NKRF POLR2A FTL ENSG00000267898 GC19P048966 GC19P048967 NUP62 PRR12 PTOV1-AS2 GRWD1 PIH1D1 IRF3
GH19J048988 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE 11 -73.2 -73162 7.2 SP1 ZFX CTCF ELF3 NKRF POLR2A ZNF121 CEBPG GTF2F1 ZNF687 RUVBL2 GYS1 NUP62 GRWD1 PTOV1-AS2 SNORD35A ENSG00000268047 IRF3 SNORD35B SNRNP70
GH19J048794 Enhancer 1.3 ENCODE dbSUPER 15.1 +123.1 123057 2.7 SP1 ELF3 ZFX CC2D1A CTCF ZKSCAN8 SIX5 ZNF148 ZNF121 CEBPG RASIP1 NUCB1-AS1 PRR12 SNRNP70 IZUMO1 TULP2 MAMSTR FUT2 NUCB1 CGB7
GH19J048977 Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 11.4 -59.9 -59917 3.6 SP1 ZNF384 ZSCAN21 SP7 KLF14 CREM PRDM1 ZBED1 IKZF1 CREB1 BAX NUCB1-AS1 NUCB1 TULP2 CGB7 NTF4 KCNA7 DBP SEC1P C19orf73
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NUCB1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NUCB1-AS1 Gene

Genomic Locations for NUCB1-AS1 Gene
chr19:48,910,930-48,918,891
(GRCh38/hg38)
Size:
7,962 bases
Orientation:
Minus strand
chr19:49,414,187-49,422,148
(GRCh37/hg19)
Size:
7,962 bases
Orientation:
Minus strand

Genomic View for NUCB1-AS1 Gene

Genes around NUCB1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NUCB1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NUCB1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NUCB1-AS1 Gene

Proteins for NUCB1-AS1 Gene

Post-translational modifications for NUCB1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NUCB1-AS1 Gene

Domains & Families for NUCB1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NUCB1-AS1 Gene

Function for NUCB1-AS1 Gene

Phenotypes From GWAS Catalog for NUCB1-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NUCB1-AS1 Gene

Localization for NUCB1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NUCB1-AS1 Gene

Pathways & Interactions for NUCB1-AS1 Gene

PathCards logo

SuperPathways for NUCB1-AS1 Gene

No Data Available

Interacting Proteins for NUCB1-AS1 Gene

Gene Ontology (GO) - Biological Process for NUCB1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NUCB1-AS1 Gene

Drugs & Compounds for NUCB1-AS1 Gene

No Compound Related Data Available

Transcripts for NUCB1-AS1 Gene

mRNA/cDNA for NUCB1-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for NUCB1-AS1 Gene

No ASD Table

Relevant External Links for NUCB1-AS1 Gene

GeneLoc Exon Structure for
NUCB1-AS1
ECgene alternative splicing isoforms for
NUCB1-AS1

Expression for NUCB1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NUCB1-AS1 Gene

genes like me logo Genes that share expression patterns with NUCB1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NUCB1-AS1 Gene

Orthologs for NUCB1-AS1 Gene

Evolution for NUCB1-AS1 Gene

ENSEMBL:
Gene Tree for NUCB1-AS1 (if available)
TreeFam:
Gene Tree for NUCB1-AS1 (if available)

No data available for Orthologs for NUCB1-AS1 Gene

Paralogs for NUCB1-AS1 Gene

No data available for Paralogs for NUCB1-AS1 Gene

Variants for NUCB1-AS1 Gene

Sequence variations from dbSNP and Humsavar for NUCB1-AS1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000491747 -- 48,916,047(-) A/G intron_variant
rs1000780074 -- 48,914,533(-) G/C intron_variant
rs1000970929 -- 48,917,776(-) G/A/T intron_variant
rs1001370521 -- 48,910,514(-) T/A downstream_transcript_variant
rs1001618621 -- 48,915,528(-) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NUCB1-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2670526 CNV deletion 23128226
esv3644606 CNV loss 21293372
nsv833855 CNV loss 17160897
nsv833856 CNV loss 17160897
nsv833857 CNV loss 17160897
nsv9739 CNV gain+loss 18304495

Additional Variant Information for NUCB1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NUCB1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NUCB1-AS1 Gene

Disorders for NUCB1-AS1 Gene

Additional Disease Information for NUCB1-AS1

No disorders were found for NUCB1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NUCB1-AS1 Gene

Publications for NUCB1-AS1 Gene

No publications were found for NUCB1-AS1 Gene.

No data available for External Links for NUCB1-AS1 Gene

Products for NUCB1-AS1 Gene

Sources for NUCB1-AS1 Gene

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