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NUBPL Gene(Protein Coding)

Nucleotide Binding Protein Like

GCID:
GC14P031489
GIFtS:
46
Genes Participants
UDN Logo

Aliases for NUBPL Gene

Aliases for NUBPL Gene

  • Nucleotide Binding Protein Like 2 3 5
  • Iron-Sulfur Protein Required For NADH Dehydrogenase 2 3
  • IND1 Homolog 3 4
  • C14orf127 3 4
  • HuInd1 3 4
  • Chromosome 14 Open Reading Frame 127 2
  • Nucleotide Binding Protein-Like 2
  • Nucleotide-Binding Protein-Like 4
  • Iron-Sulfur Protein NUBPL 3
  • IND1 3

External Ids for NUBPL Gene

Previous HGNC Symbols for NUBPL Gene

  • C14orf127

Previous GeneCards Identifiers for NUBPL Gene

  • GC14P031101
  • GC14P032032
  • GC14P012147
  • GC14P031959

Summaries for NUBPL Gene

Entrez Gene Summary for NUBPL Gene

  • This gene encodes a member of the Mrp/NBP35 ATP-binding proteins family. The encoded protein is required for the assembly of the respiratory chain NADH dehydrogenase (complex I), an oligomeric enzymatic complex located in the inner mitochondrial membrane. Mutations in this gene cause mitochondrial complex I deficiency. Alternative splicing results in multiple transcript variants. [provided by RefSeq, May 2014]

GeneCards Summary for NUBPL Gene

NUBPL (Nucleotide Binding Protein Like) is a Protein Coding gene. Diseases associated with NUBPL include Mitochondrial Complex I Deficiency and Leber Hereditary Optic Neuropathy. Among its related pathways are Respiratory electron transport, ATP synthesis by chemiosmotic coupling, and heat production by uncoupling proteins. and Metabolism. Gene Ontology (GO) annotations related to this gene include 4 iron, 4 sulfur cluster binding. An important paralog of this gene is NUBP1.

UniProtKB/Swiss-Prot for NUBPL Gene

  • Required for the assembly of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I). May deliver of one or more Fe-S clusters to complex I subunits.

Additional gene information for NUBPL Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NUBPL Gene

Genomics for NUBPL Gene

Products:

  1. Regulatory Element

GeneHancer (GH) Regulatory Elements for NUBPL Gene

Promoters and enhancers for NUBPL Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH14I031560 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 550.2 +71.6 71640 1.9 HDGF PKNOX1 FOXA2 MLX ZFP64 ARID4B SIN3A DMAP1 ZNF2 ZBTB7B ENSG00000257155 LOC105370437 NUBPL RNU6-602P
GH14I031489 Enhancer 0.5 ENCODE 550.8 -0.1 -106 0.1 IKZF1 DPF2 IKZF2 RUNX3 SPI1 GPR33 LOC105370438 NUBPL HEATR5A LOC101927124
GH14I031488 Promoter 0.5 EPDnew 550.8 -1.9 -1897 0.1 GPR33 LOC105370438 NUBPL HEATR5A LOC101927124 RPL9P4
GH14I031490 Enhancer 0.4 Ensembl 550.8 +0.2 245 0.4 IKZF1 DPF2 IKZF2 LOC105370438 NUBPL HEATR5A LOC101927124 PIR47875
GH14I031892 Enhancer 0.7 ENCODE 8.3 +404.4 404374 3.6 MEIS2 PKNOX1 ATF1 FOXA2 TEAD4 TAL1 FOSL1 TCF12 CTBP1 GATA2 NUBPL ENSG00000203546 PIR42868 ENSG00000257472
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NUBPL on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the NUBPL gene promoter:

Genomic Locations for NUBPL Gene

Genomic Locations for NUBPL Gene
chr14:31,489,956-31,861,224
(GRCh38/hg38)
Size:
371,269 bases
Orientation:
Plus strand
chr14:31,959,162-32,330,430
(GRCh37/hg19)

Genomic View for NUBPL Gene

Genes around NUBPL on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NUBPL Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NUBPL Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for NUBPL Gene

Proteins for NUBPL Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for NUBPL Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q8TB37-NUBPL_HUMAN
    Recommended name:
    Iron-sulfur protein NUBPL
    Protein Accession:
    Q8TB37
    Secondary Accessions:
    • B4DHZ1
    • Q86TZ4
    • Q9H9M2

    Protein attributes for NUBPL Gene

    Size:
    319 amino acids
    Molecular mass:
    34083 Da
    Cofactor:
    Name=[4Fe-4S] cluster; Xref=ChEBI:CHEBI:49883;
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH24919.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=BAB14203.1; Type=Erroneous initiation; Note=Translation N-terminally extended.; Evidence={ECO:0000305}; Sequence=CAD62349.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for NUBPL Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NUBPL Gene

Protein Expression for NUBPL Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for NUBPL Gene

No Post-translational modifications

Other Protein References for NUBPL Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NUBPL Gene

Domains & Families for NUBPL Gene

Gene Families for NUBPL Gene

HGNC:
Human Protein Atlas (HPA):
  • Disease related genes
  • Predicted intracellular proteins
  • Predicted secreted proteins

Protein Domains for NUBPL Gene

InterPro:
Blocks:
ProtoNet:

Suggested Antigen Peptide Sequences for NUBPL Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q8TB37

UniProtKB/Swiss-Prot:

NUBPL_HUMAN :
  • Belongs to the Mrp/NBP35 ATP-binding proteins family.
Family:
  • Belongs to the Mrp/NBP35 ATP-binding proteins family.
genes like me logo Genes that share domains with NUBPL: view

Function for NUBPL Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for NUBPL Gene

UniProtKB/Swiss-Prot Function:
Required for the assembly of the mitochondrial membrane respiratory chain NADH dehydrogenase (Complex I). May deliver of one or more Fe-S clusters to complex I subunits.

Phenotypes From GWAS Catalog for NUBPL Gene

Gene Ontology (GO) - Molecular Function for NUBPL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005524 ATP binding IEA --
GO:0046872 metal ion binding IEA --
GO:0051536 iron-sulfur cluster binding IEA --
GO:0051539 4 iron, 4 sulfur cluster binding IDA 19752196
genes like me logo Genes that share ontologies with NUBPL: view
genes like me logo Genes that share phenotypes with NUBPL: view

Human Phenotype Ontology for NUBPL Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for NUBPL Gene

MGI Knock Outs for NUBPL:

Animal Model Products

Clone Products

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for NUBPL Gene

Localization for NUBPL Gene

Subcellular locations from UniProtKB/Swiss-Prot for NUBPL Gene

Mitochondrion.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NUBPL gene
Compartment Confidence
mitochondrion 5
plasma membrane 4
nucleus 1
cytosol 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Mitochondria (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for NUBPL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005739 mitochondrion IDA 19752196
GO:0005759 mitochondrial matrix TAS --
GO:0005886 plasma membrane IDA --
genes like me logo Genes that share ontologies with NUBPL: view

Pathways & Interactions for NUBPL Gene

genes like me logo Genes that share pathways with NUBPL: view

Gene Ontology (GO) - Biological Process for NUBPL Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0032981 mitochondrial respiratory chain complex I assembly TAS --
GO:0070584 mitochondrion morphogenesis IMP 19752196
genes like me logo Genes that share ontologies with NUBPL: view

No data available for SIGNOR curated interactions for NUBPL Gene

Drugs & Compounds for NUBPL Gene

Products:

  1. Drug

(1) Drugs for NUBPL Gene - From: PharmGKB

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Iloperidone Approved Pharma Antagonist Dopamine (D2) and serotonin (5HT2) receptor antagonist 0
genes like me logo Genes that share compounds with NUBPL: view

Transcripts for NUBPL Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for NUBPL Gene

(11) REFSEQ mRNAs :
(6) Additional mRNA sequences :
(75) Selected AceView cDNA sequences:
(13) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NUBPL Gene

Nucleotide binding protein-like:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NUBPL Gene

No ASD Table

Relevant External Links for NUBPL Gene

GeneLoc Exon Structure for
NUBPL
ECgene alternative splicing isoforms for
NUBPL

Expression for NUBPL Gene

Products:

  1. Primer

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NUBPL Gene

mRNA expression in normal human tissues for NUBPL Gene
mRNA expression by GTEx for NUBPL GenemRNA expression by BioGPS for NUBPL Gene

Protein differential expression in normal tissues from HIPED for NUBPL Gene

This gene is overexpressed in Heart (14.8) and Salivary gland (12.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, PaxDb, MaxQB, and MOPED for NUBPL Gene



Protein tissue co-expression partners for NUBPL Gene

- Elite partner

NURSA nuclear receptor signaling pathways regulating expression of NUBPL Gene:

NUBPL

SOURCE GeneReport for Unigene cluster for NUBPL Gene:

Hs.288981

mRNA Expression by UniProt/SwissProt for NUBPL Gene:

Q8TB37-NUBPL_HUMAN
Tissue specificity: Highest expression in liver and kidney. expressed at significant levels in small intestine and brain (at protein level).

Phenotype-based relationships between genes and organs from Gene ORGANizer for NUBPL Gene

Germ Layers:
  • ectoderm
  • endoderm
  • mesoderm
Systems:
  • cardiovascular
  • digestive
  • endocrine
  • integumentary
  • nervous
  • respiratory
  • skeletal muscle
  • skeleton
Regions:
Head and neck:
  • brain
  • cerebellum
  • cerebrospinal fluid
  • cranial nerve
  • ear
  • eye
  • eyelid
  • face
  • head
  • meninges
  • neck
  • skull
Thorax:
  • esophagus
  • heart
  • heart valve
  • lung
Abdomen:
  • adrenal gland
  • liver
  • stomach
Limb:
  • foot
  • lower limb
General:
  • peripheral nerve
  • peripheral nervous system
  • skin
  • spinal cord
  • sweat gland
genes like me logo Genes that share expression patterns with NUBPL: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues and Evidence on tissue expression from TISSUES for NUBPL Gene

Orthologs for NUBPL Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for NUBPL Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
 Mammalia NUBPL 33 34
  • 99.48 (n)
dog
(Canis familiaris)
 Mammalia NUBPL 33 34
  • 90.64 (n)
cow
(Bos Taurus)
 Mammalia NUBPL 33 34
  • 90.07 (n)
platypus
(Ornithorhynchus anatinus)
 Mammalia NUBPL 34
  • 87 (a)
 OneToOne
mouse
(Mus musculus)
 Mammalia Nubpl 33 16 34
  • 86.73 (n)
rat
(Rattus norvegicus)
 Mammalia Nubpl 33
  • 86.42 (n)
oppossum
(Monodelphis domestica)
 Mammalia NUBPL 34
  • 60 (a)
 OneToOne
chicken
(Gallus gallus)
 Aves NUBPL 33 34
  • 73.78 (n)
lizard
(Anolis carolinensis)
 Reptilia NUBPL 34
  • 75 (a)
 OneToOne
tropical clawed frog
(Silurana tropicalis)
 Amphibia nubpl 33
  • 66.9 (n)
Str.16298 33
African clawed frog
(Xenopus laevis)
 Amphibia Xl.14274 33
zebrafish
(Danio rerio)
 Actinopterygii nubpl 33 34
  • 69.88 (n)
fruit fly
(Drosophila melanogaster)
 Insecta CG3262 33 34
  • 52.72 (n)
African malaria mosquito
(Anopheles gambiae)
 Insecta AgaP_AGAP008828 33
  • 51.9 (n)
baker's yeast
(Saccharomyces cerevisiae)
 Saccharomycetes NBP35 34
  • 29 (a)
 OneToMany
thale cress
(Arabidopsis thaliana)
 eudicotyledons INDL 33
  • 59.1 (n)
Alicante grape
(Vitis vinifera)
 eudicotyledons Vvi.12146 33
rice
(Oryza sativa)
 Liliopsida Os03g0627300 33
  • 62.93 (n)
Os.27341 33
barley
(Hordeum vulgare)
 Liliopsida Hv.4690 33
wheat
(Triticum aestivum)
 Liliopsida Ta.9359 33
corn
(Zea mays)
 Liliopsida Zm.13204 33
bread mold
(Neurospora crassa)
 Ascomycetes NCU11285 33
  • 50.39 (n)
sea squirt
(Ciona intestinalis)
 Ascidiacea Cin.698 33
Species where no ortholog for NUBPL was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • worm (Caenorhabditis elegans)

Evolution for NUBPL Gene

ENSEMBL:
Gene Tree for NUBPL (if available)
TreeFam:
Gene Tree for NUBPL (if available)

Paralogs for NUBPL Gene

Paralogs for NUBPL Gene

(2) SIMAP similar genes for NUBPL Gene using alignment to 7 proteins:

genes like me logo Genes that share paralogs with NUBPL: view

Variants for NUBPL Gene

Sequence variations from dbSNP and Humsavar for NUBPL Gene

SNP ID Clin Chr 14 pos Variation AA Info Type
rs10136892 benign, Mitochondrial complex I deficiency 31,860,175(+) T/C 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant
rs10147479 likely-benign, Mitochondrial complex I deficiency 31,860,016(+) C/G/T 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant
rs10162515 likely-benign, Mitochondrial complex I deficiency 31,859,624(+) C/T 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant
rs10162516 likely-benign, Mitochondrial complex I deficiency 31,859,492(+) G/A 3_prime_UTR_variant, genic_downstream_transcript_variant, non_coding_transcript_variant
rs1019214815 uncertain-significance, Mitochondrial complex I deficiency 31,561,401(+) G/A 5_prime_UTR_variant, genic_upstream_transcript_variant, non_coding_transcript_variant, upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for NUBPL Gene

Variant ID Type Subtype PubMed ID
nsv974321 CNV duplication 23825009
nsv85392 CNV deletion 16902084
nsv564183 CNV loss 21841781
nsv564182 CNV gain 21841781
nsv526200 CNV gain 19592680
nsv521541 CNV loss 19592680
nsv520783 CNV loss 19592680
nsv456199 CNV loss 19166990
nsv1150909 CNV duplication 26484159
nsv1046526 CNV gain 25217958
esv8132 CNV gain 19470904
esv3892496 CNV loss 25118596
esv3633977 CNV loss 21293372
esv3633975 CNV loss 21293372
esv3633974 CNV loss 21293372
esv3633973 CNV loss 21293372
esv3633971 CNV loss 21293372
esv3581101 CNV loss 25503493
esv3581100 CNV loss 25503493
esv3581099 CNV loss 25503493
esv3448539 CNV insertion 20981092
esv3306848 CNV mobile element insertion 20981092
esv2678410 CNV deletion 23128226
esv2672738 CNV deletion 23128226
esv2668030 CNV deletion 23128226
esv2663509 CNV deletion 23128226
esv2662062 CNV deletion 23128226
dgv3607n54 CNV gain 21841781
dgv130n21 CNV loss 19592680

Variation tolerance for NUBPL Gene

Residual Variation Intolerance Score: 90.3% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 1.45; 28.38% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for NUBPL Gene

Human Gene Mutation Database (HGMD)
NUBPL
SNPedia medical, phenotypic, and genealogical associations of SNPs for
NUBPL

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NUBPL Gene

Disorders for NUBPL Gene

MalaCards: The human disease database

(3) MalaCards diseases for NUBPL Gene - From: HGMD, OMIM, ClinVar, GTR, Swiss-Prot, DISEASES, and GeneCards

Disorder Aliases PubMed IDs
mitochondrial complex i deficiency
  • nadh:q(1) oxidoreductase deficiency
leber hereditary optic neuropathy
  • leber optic atrophy
leigh syndrome
  • ls
- elite association - COSMIC cancer census association via MalaCards
Search NUBPL in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

NUBPL_HUMAN
  • Mitochondrial complex I deficiency (MT-C1D) [MIM:252010]: A disorder of the mitochondrial respiratory chain that causes a wide range of clinical manifestations from lethal neonatal disease to adult-onset neurodegenerative disorders. Phenotypes include macrocephaly with progressive leukodystrophy, non-specific encephalopathy, cardiomyopathy, myopathy, liver disease, Leigh syndrome, Leber hereditary optic neuropathy, and some forms of Parkinson disease. {ECO:0000269 PubMed:20818383, ECO:0000269 PubMed:23553477}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Additional Disease Information for NUBPL

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
genes like me logo Genes that share disorders with NUBPL: view

No data available for Genatlas for NUBPL Gene

Publications for NUBPL Gene

  1. High-throughput, pooled sequencing identifies mutations in NUBPL and FOXRED1 in human complex I deficiency. (PMID: 20818383) Calvo SE … Mootha VK (Nature genetics 2010) 2 3 4 58
  2. NUBPL mutations in patients with complex I deficiency and a distinct MRI pattern. (PMID: 23553477) Kevelam SH … van der Knaap MS (Neurology 2013) 3 4 58
  3. Genetic variants in nuclear-encoded mitochondrial genes influence AIDS progression. (PMID: 20877624) Hendrickson SL … O'Brien SJ (PloS one 2010) 3 44 58
  4. Whole genome association study identifies polymorphisms associated with QT prolongation during iloperidone treatment of schizophrenia. (PMID: 18521091) Volpi S … Lavedan C (Molecular psychiatry 2009) 3 44 58
  5. Genome-wide association analysis of susceptibility and clinical phenotype in multiple sclerosis. (PMID: 19010793) Baranzini SE … Oksenberg JR (Human molecular genetics 2009) 3 44 58

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