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Aliases for NTRK3-AS1 Gene

Subcategory (RNA class) for NTRK3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for NTRK3-AS1 Gene

  • NTRK3 Antisense RNA 1 2 3 5
  • NTRK3 Antisense RNA 1 (Non-Protein Coding) 2 3

External Ids for NTRK3-AS1 Gene

Previous GeneCards Identifiers for NTRK3-AS1 Gene

  • GC15P088797

Summaries for NTRK3-AS1 Gene

GeneCards Summary for NTRK3-AS1 Gene

NTRK3-AS1 (NTRK3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NTRK3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NTRK3-AS1 Gene

Genomics for NTRK3-AS1 Gene

GeneHancer (GH) Regulatory Elements for NTRK3-AS1 Gene

Promoters and enhancers for NTRK3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH15J088255 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE 14.6 +4.0 3990 4.6 NFIB ZBTB7A ZNF600 ZIC2 POLR2A ZNF692 ZNF341 ZNF561 SCRT2 CTCF NTRK3 NTRK3-AS1
GH15J088246 Enhancer 0.8 ENCODE 6.4 -5.8 -5785 0.2 CTCF MAFK RAD21 ZIC2 ZNF143 REST TRIM22 ZNF316 SMARCA5 RUNX3 MRPL46 MRPS11 ENSG00000173867 NTRK3-AS1 NTRK3 MED28P6
GH15J088238 Enhancer 0.7 Ensembl ENCODE 6 -13.7 -13712 1.2 CEBPB CEBPG ZNF16 ZBTB7B ENSG00000173867 NTRK3-AS1 NTRK3 MED28P6
GH15J087940 Promoter/Enhancer 0.8 EPDnew Ensembl 4.4 -312.2 -312214 1.4 ZMYM3 NTRK3 NTRK3-AS1 GC15M087860 MED28P6
GH15J088073 Enhancer 0.4 Ensembl ENCODE 5.8 -179.3 -179329 1.6 NTRK3-AS1 MED28P6 NTRK3 GC15M087860
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NTRK3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NTRK3-AS1 Gene

Genomic Locations for NTRK3-AS1 Gene
chr15:88,252,730-88,271,066
(GRCh38/hg38)
Size:
18,337 bases
Orientation:
Plus strand
chr15:88,795,961-88,814,297
(GRCh37/hg19)
Size:
18,337 bases
Orientation:
Plus strand

Genomic View for NTRK3-AS1 Gene

Genes around NTRK3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NTRK3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NTRK3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NTRK3-AS1 Gene

Proteins for NTRK3-AS1 Gene

Post-translational modifications for NTRK3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NTRK3-AS1 Gene

Domains & Families for NTRK3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NTRK3-AS1 Gene

Function for NTRK3-AS1 Gene

Phenotypes From GWAS Catalog for NTRK3-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NTRK3-AS1 Gene

Localization for NTRK3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NTRK3-AS1 Gene

Pathways & Interactions for NTRK3-AS1 Gene

PathCards logo

SuperPathways for NTRK3-AS1 Gene

No Data Available

Interacting Proteins for NTRK3-AS1 Gene

Gene Ontology (GO) - Biological Process for NTRK3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NTRK3-AS1 Gene

Drugs & Compounds for NTRK3-AS1 Gene

No Compound Related Data Available

Transcripts for NTRK3-AS1 Gene

mRNA/cDNA for NTRK3-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Unigene Clusters for NTRK3-AS1 Gene

NTRK3 antisense RNA 1:
Representative Sequences:

Alternative Splicing Database (ASD) splice patterns (SP) for NTRK3-AS1 Gene

No ASD Table

Relevant External Links for NTRK3-AS1 Gene

GeneLoc Exon Structure for
NTRK3-AS1
ECgene alternative splicing isoforms for
NTRK3-AS1

Expression for NTRK3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NTRK3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NTRK3-AS1 Gene

This gene is overexpressed in Testis (x39.4).

SOURCE GeneReport for Unigene cluster for NTRK3-AS1 Gene:

Hs.578429
genes like me logo Genes that share expression patterns with NTRK3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NTRK3-AS1 Gene

Orthologs for NTRK3-AS1 Gene

Evolution for NTRK3-AS1 Gene

ENSEMBL:
Gene Tree for NTRK3-AS1 (if available)
TreeFam:
Gene Tree for NTRK3-AS1 (if available)

No data available for Orthologs for NTRK3-AS1 Gene

Paralogs for NTRK3-AS1 Gene

No data available for Paralogs for NTRK3-AS1 Gene

Variants for NTRK3-AS1 Gene

Sequence variations from dbSNP and Humsavar for NTRK3-AS1 Gene

SNP ID Clin Chr 15 pos Variation AA Info Type
rs1000181502 -- 88,261,889(+) T/C intron_variant
rs1000462623 -- 88,252,976(+) C/A non_coding_transcript_variant
rs1000499717 -- 88,267,661(+) A/C/G intron_variant
rs1000537320 -- 88,258,045(+) C/T intron_variant
rs1000860253 -- 88,270,734(+) A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for NTRK3-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1112675 CNV deletion 24896259
nsv827427 CNV gain 20364138
nsv952021 CNV deletion 24416366

Additional Variant Information for NTRK3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NTRK3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NTRK3-AS1 Gene

Disorders for NTRK3-AS1 Gene

Additional Disease Information for NTRK3-AS1

No disorders were found for NTRK3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NTRK3-AS1 Gene

Publications for NTRK3-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for NTRK3-AS1 Gene

Sources for NTRK3-AS1 Gene

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