Aliases for NTM-IT Gene

Data sources for NTM-IT Gene:

Subcategory (RNA class) for NTM-IT Gene

lncRNA

Aliases for NTM-IT Gene

External Ids for NTM-IT Gene

Previous HGNC Symbols for NTM-IT Gene

  • NTM-IT3

Previous GeneCards Identifiers for NTM-IT Gene

  • GC11P132156

Summaries for NTM-IT Gene

GeneCards Summary for NTM-IT Gene

NTM-IT (NTM Intronic Transcript) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NTM-IT Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NTM-IT Gene

Genomics for NTM-IT Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NTM-IT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J132283 Enhancer 0.2 Ensembl 250.7 +0.3 300 2 NTM-IT HSALNG0088303 NTM
GH11J132278 Enhancer 0.7 Ensembl ENCODE 0.4 -5.1 -5108 0.8 CTCF TRIM22 SMC3 RAD21 GATA2 ZNF143 USF1 NTM-IT HSALNG0088300 NTM
GH11J132313 Enhancer 0.4 Ensembl 0.3 +28.0 28000 0.6 CTCF RAD21 NFIB NFIC HSALNG0088303 NTM-IT NTM
GH11J132312 Enhancer 0.4 ENCODE 0.3 +28.5 28491 0.2 CTCF SMC3 RAD21 ZNF143 HSALNG0088303 NTM-IT NTM
GH11J132289 Enhancer 0.3 Ensembl 0.4 +5.6 5600 1 RUNX3 NTM-IT HSALNG0088303 NTM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NTM-IT on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NTM-IT Gene

Latest Assembly
chr11:132,284,301-132,288,459
(GRCh38/hg38)
Size:
4,159 bases
Orientation:
Plus strand

Previous Assembly
chr11:132,154,196-132,158,353
(GRCh37/hg19 by Entrez Gene)
Size:
4,158 bases
Orientation:
Plus strand

chr11:132,154,196-132,154,975
(GRCh37/hg19 by Ensembl)
Size:
780 bases
Orientation:
Plus strand

Genomic View for NTM-IT Gene

Genes around NTM-IT on UCSC Golden Path with GeneCards custom track
NTM-IT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
NTM-IT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NTM-IT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NTM-IT Gene

Proteins for NTM-IT Gene

Post-translational modifications for NTM-IT Gene

No Post-translational modifications

No data available for DME Specific Peptides for NTM-IT Gene

Domains & Families for NTM-IT Gene

Gene Families for NTM-IT Gene

genes like me logo Genes that share domains with NTM-IT: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NTM-IT Gene

Function for NTM-IT Gene

Phenotypes From GWAS Catalog for NTM-IT Gene

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NTM-IT Gene

Localization for NTM-IT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NTM-IT Gene

Pathways & Interactions for NTM-IT Gene

PathCards logo

SuperPathways for NTM-IT Gene

No Data Available

Gene Ontology (GO) - Biological Process for NTM-IT Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NTM-IT Gene

Drugs & Compounds for NTM-IT Gene

No Compound Related Data Available

Transcripts for NTM-IT Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NTM-IT Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075A01A_9606 lncRNA 767 4

RefSeq: NR_046820,

LncBook: HSALNT0183674,

LNCipedia: NTM-IT:2,

NONCODE: NONHSAT025192.2,

URS00002D10E5_9606 lncRNA 373 3

Ensembl: ENST00000421651 (view in UCSC) ,

LncBook: HSALNT0183671, HSALNT0183673,

LNCipedia: NTM-IT:1,

URS00009B5E2A_9606 lncRNA 373 2

LncBook: HSALNT0183672,

NONCODE: NONHSAT159925.1,

URS0001BCE02C_9606 lncRNA 764 1

LncBook: HSALNT0183674,

URS0001BEB4DC_9606 lncRNA 373 1

LncBook: HSALNT0183672,

NTM-IT in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NTM-IT Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for NTM-IT Gene

No ASD Table

Relevant External Links for NTM-IT Gene

GeneLoc Exon Structure for
NTM-IT

Expression for NTM-IT Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NTM-IT Gene

genes like me logo Genes that share expression patterns with NTM-IT: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NTM-IT Gene

Orthologs for NTM-IT Gene

Evolution for NTM-IT Gene

ENSEMBL:
Gene Tree for NTM-IT (if available)
TreeFam:
Gene Tree for NTM-IT (if available)

No data available for Orthologs for NTM-IT Gene

Paralogs for NTM-IT Gene

No data available for Paralogs for NTM-IT Gene

Variants for NTM-IT Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for NTM-IT Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for NTM-IT Gene

Variant ID Type Subtype PubMed ID
esv3628121 CNV gain 21293372
esv3892111 CNV loss 25118596

Additional Variant Information for NTM-IT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NTM-IT

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for NTM-IT Gene

Disorders for NTM-IT Gene

Additional Disease Information for NTM-IT

No disorders were found for NTM-IT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NTM-IT Gene

Publications for NTM-IT Gene

No publications were found for NTM-IT Gene.

Products for NTM-IT Gene

Sources for NTM-IT Gene