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Aliases for NTM-IT Gene

Subcategory (RNA class) for NTM-IT Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NTM-IT Gene

  • NTM Intronic Transcript 2 3 5
  • NTM Intronic Transcript 3 (Non-Protein Coding) 2 3
  • NTM Intronic Transcript (Non-Protein Coding) 2 3
  • NTM-IT3 3

External Ids for NTM-IT Gene

Previous HGNC Symbols for NTM-IT Gene

  • NTM-IT3

Previous GeneCards Identifiers for NTM-IT Gene

  • GC11P132156

Summaries for NTM-IT Gene

GeneCards Summary for NTM-IT Gene

NTM-IT (NTM Intronic Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NTM-IT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NTM-IT Gene

Genomics for NTM-IT Gene

GeneHancer (GH) Regulatory Elements for NTM-IT Gene

Promoters and enhancers for NTM-IT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11I132278 Enhancer 0.3 ENCODE 0.4 -5.4 -5440 0.2 ZZZ3 NTM-IT GC11M132240 NTM
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NTM-IT on UCSC Golden Path with GeneCards custom track

Genomic Locations for NTM-IT Gene

Genomic Locations for NTM-IT Gene
chr11:132,284,302-132,288,459
(GRCh38/hg38)
Size:
4,158 bases
Orientation:
Plus strand
chr11:132,154,196-132,154,975
(GRCh37/hg19)

Genomic View for NTM-IT Gene

Genes around NTM-IT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NTM-IT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NTM-IT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NTM-IT Gene

Proteins for NTM-IT Gene

Post-translational modifications for NTM-IT Gene

No Post-translational modifications

No data available for DME Specific Peptides for NTM-IT Gene

Domains & Families for NTM-IT Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NTM-IT Gene

Function for NTM-IT Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NTM-IT Gene

Localization for NTM-IT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NTM-IT Gene

Pathways & Interactions for NTM-IT Gene

SuperPathways for NTM-IT Gene

No Data Available

Interacting Proteins for NTM-IT Gene

Gene Ontology (GO) - Biological Process for NTM-IT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NTM-IT Gene

Drugs & Compounds for NTM-IT Gene

No Compound Related Data Available

Transcripts for NTM-IT Gene

mRNA/cDNA for NTM-IT Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NTM-IT Gene

No ASD Table

Relevant External Links for NTM-IT Gene

GeneLoc Exon Structure for
NTM-IT
ECgene alternative splicing isoforms for
NTM-IT

Expression for NTM-IT Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NTM-IT Gene

genes like me logo Genes that share expression patterns with NTM-IT: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NTM-IT Gene

Orthologs for NTM-IT Gene

Evolution for NTM-IT Gene

ENSEMBL:
Gene Tree for NTM-IT (if available)
TreeFam:
Gene Tree for NTM-IT (if available)

No data available for Orthologs for NTM-IT Gene

Paralogs for NTM-IT Gene

No data available for Paralogs for NTM-IT Gene

Variants for NTM-IT Gene

Sequence variations from dbSNP and Humsavar for NTM-IT Gene

SNP ID Clin Chr 11 pos Variation AA Info Type
rs1000612324 -- 132,284,790(+) G/A non_coding_transcript_variant
rs1000983734 -- 132,282,697(+) G/A upstream_transcript_variant
rs1001639275 -- 132,285,071(+) G/A non_coding_transcript_variant
rs1001784462 -- 132,284,412(+) A/G intron_variant
rs1002535442 -- 132,282,376(+) T/C upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for NTM-IT Gene

Variant ID Type Subtype PubMed ID
esv3892111 CNV loss 25118596
esv3628121 CNV gain 21293372

Additional Variant Information for NTM-IT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NTM-IT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NTM-IT Gene

Disorders for NTM-IT Gene

Additional Disease Information for NTM-IT

No disorders were found for NTM-IT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NTM-IT Gene

Publications for NTM-IT Gene

No publications were found for NTM-IT Gene.

Products for NTM-IT Gene

Sources for NTM-IT Gene

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