Aliases for NTM-AS1 Gene

Subcategory (RNA class) for NTM-AS1 Gene

lncRNA

Aliases for NTM-AS1 Gene

External Ids for NTM-AS1 Gene

Previous HGNC Symbols for NTM-AS1 Gene

  • C11orf39

Previous GeneCards Identifiers for NTM-AS1 Gene

  • GC11M131663

Summaries for NTM-AS1 Gene

GeneCards Summary for NTM-AS1 Gene

NTM-AS1 (NTM Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NTM-AS1 Gene

Genomics for NTM-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NTM-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J131661 Promoter/Enhancer 0.8 EPDnew Ensembl CraniofacialAtlas dbSUPER 250.7 +0.9 926 1.6 NTM-AS1 HSALNG0088290 NTM
GH11J130915 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE CraniofacialAtlas 12 +747.5 747475 2.3 TBP NR2C1 SMAD5 ETS1 MBD2 ZNF217 POLR2A CTCF BHLHE40 ELF1 SNX19 HSALNG0088255 piR-44546-001 NTM-AS1 LOC101929653 ZBTB44 PRDM10 ADAMTS15
GH11J131687 Enhancer 0.6 Ensembl 11.2 -24.6 -24559 1 CTCF GABPB1 RAD21 RBPJ ZNF48 EGR1 ZNF143 XRCC5 RB1 SMC3 NTM-AS1 NTM lnc-ADAMTS15-12
GH11J131643 Enhancer 0.3 Ensembl CraniofacialAtlas 11.7 +20.3 20288 0.7 NTM-AS1 NTM HSALNG0088290
GH11J131640 Enhancer 0.3 Ensembl ENCODE 11.7 +23.1 23141 1.2 HSALNG0088290 NTM-AS1 NTM ENSG00000285980
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NTM-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NTM-AS1 Gene

Latest Assembly
chr11:131,622,299-131,663,742
(GRCh38/hg38)
Size:
41,444 bases
Orientation:
Minus strand

Previous Assembly
chr11:131,532,023-131,533,450
(GRCh37/hg19 by Entrez Gene)
Size:
1,428 bases
Orientation:
Minus strand

chr11:131,532,025-131,533,477
(GRCh37/hg19 by Ensembl)
Size:
1,453 bases
Orientation:
Minus strand

Genomic View for NTM-AS1 Gene

Genes around NTM-AS1 on UCSC Golden Path with GeneCards custom track
NTM-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
NTM-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NTM-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NTM-AS1 Gene

Proteins for NTM-AS1 Gene

  • Protein details for NTM-AS1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q6ZSK4-NTAS1_HUMAN
    Recommended name:
    Putative uncharacterized protein NTM-AS1
    Protein Accession:
    Q6ZSK4

    Protein attributes for NTM-AS1 Gene

    Size:
    140 amino acids
    Molecular mass:
    15188 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NTM-AS1 Gene

Post-translational modifications for NTM-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NTM-AS1 Gene

Domains & Families for NTM-AS1 Gene

Gene Families for NTM-AS1 Gene

Protein Domains for NTM-AS1 Gene

ProtoNet:
genes like me logo Genes that share domains with NTM-AS1: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NTM-AS1 Gene

Function for NTM-AS1 Gene

Phenotypes From GWAS Catalog for NTM-AS1 Gene

Phenotypes for NTM-AS1 Gene

genes like me logo Genes that share phenotypes with NTM-AS1: view

CRISPR products for research

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NTM-AS1 Gene

Localization for NTM-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NTM-AS1 Gene

Pathways & Interactions for NTM-AS1 Gene

PathCards logo

SuperPathways for NTM-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NTM-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NTM-AS1 Gene

Drugs & Compounds for NTM-AS1 Gene

No Compound Related Data Available

Transcripts for NTM-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NTM-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000023484A_9606 lncRNA 705 3

Ensembl: ENST00000416725 (view in UCSC) ,

LNCipedia: NTM-AS1:1,

NONCODE: NONHSAT025184.2,

URS00007E48E9_9606 lncRNA 680 3

RefSeq: NR_126159,

LncBook: HSALNT0183644,

LNCipedia: NTM-AS1:2,

URS0000EF6514_9606 lncRNA 1366 1

Ensembl: ENST00000663555 (view in UCSC) ,

URS00008B70BE_9606 lncRNA 4006 2

LNCipedia: NTM-AS1:3, NTM-AS1:4,

NONCODE: NONHSAT025182.2, NONHSAT025183.2,

URS0001BCDD17_9606 lncRNA 3450 1

LncBook: HSALNT0183643,

NTM-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NTM-AS1 Gene

1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for NTM-AS1 Gene

No ASD Table

Relevant External Links for NTM-AS1 Gene

GeneLoc Exon Structure for
NTM-AS1

Expression for NTM-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NTM-AS1

No Expression Related Data Available

Primer products for research

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NTM-AS1 Gene

Orthologs for NTM-AS1 Gene

Evolution for NTM-AS1 Gene

ENSEMBL:
Gene Tree for NTM-AS1 (if available)
TreeFam:
Gene Tree for NTM-AS1 (if available)

No data available for Orthologs for NTM-AS1 Gene

Paralogs for NTM-AS1 Gene

No data available for Paralogs for NTM-AS1 Gene

Variants for NTM-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for NTM-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for NTM-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NTM-AS1

SNP Genotyping and Copy Number Assays for research

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NTM-AS1 Gene

Disorders for NTM-AS1 Gene

Additional Disease Information for NTM-AS1

No disorders were found for NTM-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NTM-AS1 Gene

Publications for NTM-AS1 Gene

  1. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
  2. The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3

Products for NTM-AS1 Gene

Sources for NTM-AS1 Gene