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Aliases for NTM-AS1 Gene
Data sources for NTM-AS1 Gene:
Subcategory (RNA class) for NTM-AS1 Gene
lncRNA
Aliases for NTM-AS1 Gene
- NTM Antisense RNA 1 (HGNC, NCBI Entrez Gene, UniProtKB/Swiss-Prot, Ensembl)
- C11orf39 (NCBI Entrez Gene, UniProtKB/Swiss-Prot)
- NTM-AS1 (Ensembl, LNCipedia)
- Putative Uncharacterized Protein NTM-AS1 (UniProtKB/Swiss-Prot)
- Chromosome 11 Open Reading Frame 39 (HGNC)
- NTM Antisense Gene Protein 1 (UniProtKB/Swiss-Prot)
- NONHSAG010073.2 (NONCODE)
- HSALNG0088291 (LncBook)
- HSALNG0088290 (LncBook)
- FLJ45436 (HGNC)
External Ids for NTM-AS1 Gene
- HGNC: 32293
- NCBI Entrez Gene: 101929637
- Ensembl: ENSG00000224795
- UniProtKB/Swiss-Prot: Q6ZSK4
Previous HGNC Symbols for NTM-AS1 Gene
- C11orf39
Previous GeneCards Identifiers for NTM-AS1 Gene
- GC11M131663
Summaries for NTM-AS1 Gene
GeneCards Summary for NTM-AS1 Gene
NTM-AS1 (NTM Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.
Additional gene information for NTM-AS1 Gene
- HGNC (32293)
- NCBI Entrez Gene (101929637)
- Ensembl (ENSG00000224795)
- UniProtKB/Swiss-Prot (Q6ZSK4)
- Open Targets Platform(ENSG00000224795)
- Search for NTM-AS1 at DataMed
- Search for NTM-AS1 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NTM-AS1 Gene
Genomics for NTM-AS1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for NTM-AS1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH11J131661 | Promoter/Enhancer | 0.8 | EPDnew Ensembl CraniofacialAtlas dbSUPER | 250.7 | +0.9 | 926 | 1.6 | NTM-AS1 HSALNG0088290 NTM | ||
| GH11J130915 | Promoter/Enhancer | 1.9 | EPDnew Ensembl ENCODE CraniofacialAtlas | 12 | +747.5 | 747475 | 2.3 | TBP NR2C1 SMAD5 ETS1 MBD2 ZNF217 POLR2A CTCF BHLHE40 ELF1 | SNX19 HSALNG0088255 piR-44546-001 NTM-AS1 LOC101929653 ZBTB44 PRDM10 ADAMTS15 | |
| GH11J131687 | Enhancer | 0.6 | Ensembl | 11.2 | -24.6 | -24559 | 1 | CTCF GABPB1 RAD21 RBPJ ZNF48 EGR1 ZNF143 XRCC5 RB1 SMC3 | NTM-AS1 NTM lnc-ADAMTS15-12 | |
| GH11J131643 | Enhancer | 0.3 | Ensembl CraniofacialAtlas | 11.7 | +20.3 | 20288 | 0.7 | NTM-AS1 NTM HSALNG0088290 | ||
| GH11J131640 | Enhancer | 0.3 | Ensembl ENCODE | 11.7 | +23.1 | 23141 | 1.2 | HSALNG0088290 NTM-AS1 NTM ENSG00000285980 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around NTM-AS1 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for NTM-AS1 Gene
Latest Assembly
- chr11:131,622,299-131,663,742
- (GRCh38/hg38)
- Size:
- 41,444 bases
- Orientation:
- Minus strand
Previous Assembly
- chr11:131,532,023-131,533,450
- (GRCh37/hg19 by Entrez Gene)
- Size:
- 1,428 bases
- Orientation:
- Minus strand
- chr11:131,532,025-131,533,477
- (GRCh37/hg19 by Ensembl)
- Size:
- 1,453 bases
- Orientation:
- Minus strand
Genomic View for NTM-AS1 Gene
Genes around NTM-AS1 on UCSC Golden Path with GeneCards custom track
NTM-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
- Cytogenetic band:
-
- 11q25 by HGNC
- 11q25 by Entrez Gene
- 11q25 by Ensembl
NTM-AS1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for NTM-AS1 Gene
Proteins for NTM-AS1 Gene
-
Protein details for NTM-AS1 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- Q6ZSK4-NTAS1_HUMAN
- Recommended name:
- Putative uncharacterized protein NTM-AS1
- Protein Accession:
- Q6ZSK4
Protein attributes for NTM-AS1 Gene
- Size:
- 140 amino acids
- Molecular mass:
- 15188 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for NTM-AS1 Gene
No Post-translational modifications
Antibodies for research
Protein products for research
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for NTM-AS1
- Origene Custom Protein Services for NTM-AS1
Assay products for research
No data available for DME Specific Peptides for NTM-AS1 Gene
Domains & Families for NTM-AS1 Gene
Gene Families for NTM-AS1 Gene
- HGNC:
Protein Domains for NTM-AS1 Gene
- ProtoNet:
No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NTM-AS1 Gene
Function for NTM-AS1 Gene
Phenotypes From GWAS Catalog for NTM-AS1 Gene
Phenotypes for NTM-AS1 Gene
- GenomeRNAi human phenotypes for NTM-AS1:
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for NTM-AS1 - Starting at $85 >
- * NTM-AS1 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
- Origene shrna and RNAi products in human, mouse, rat for NTM-AS1
- Browse OriGene Inhibitory RNA Products For NTM-AS1
Clone products for research
- Applied Biological Materials (abm): Clones for NTM-AS1 - Starting at $45 >
- * NTM-AS1 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Cell Lines for research
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NTM-AS1 Gene
Localization for NTM-AS1 Gene
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NTM-AS1 Gene
Transcripts for NTM-AS1 Gene
Non-coding RNA (ncRNA) Transcripts from RNAcentral for NTM-AS1 Gene
| RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
|---|---|---|---|---|
| URS000023484A_9606 | lncRNA | 705 | 3 |
Ensembl: ENST00000416725 (view in UCSC) , LNCipedia: NTM-AS1:1, NONCODE: NONHSAT025184.2, |
| URS00007E48E9_9606 | lncRNA | 680 | 3 |
RefSeq: NR_126159, LncBook: HSALNT0183644, LNCipedia: NTM-AS1:2, |
| URS0000EF6514_9606 | lncRNA | 1366 | 1 |
Ensembl: ENST00000663555 (view in UCSC) , |
| URS00008B70BE_9606 | lncRNA | 4006 | 2 |
LNCipedia: NTM-AS1:3, NTM-AS1:4, NONCODE: NONHSAT025182.2, NONHSAT025183.2, |
| URS0001BCDD17_9606 | lncRNA | 3450 | 1 |
LncBook: HSALNT0183643, |
NTM-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path
Additional transcripts not in RNAcentral for NTM-AS1 Gene
- 1 REFSEQ mRNAs :
- 1 NCBI additional mRNA sequence :
CRISPR products for research
- Applied Biological Materials (abm): CRISPR Clones for NTM-AS1 - Starting at $85 >
- * NTM-AS1 CRISPR as ready-to-use vector or virus: Non-viral | Lenti- | Adeno- | AAV- | siRNA - Browse All
- * Cas9 Nucleases, Nickases, Null Mutants, and GFP tag also available.
Inhibitory RNAs for research
- Origene shrna and RNAi products in human, mouse, rat for NTM-AS1
- Browse OriGene Inhibitory RNA Products For NTM-AS1
Clone products for research
- Applied Biological Materials (abm): Clones for NTM-AS1 - Starting at $45 >
- * NTM-AS1 as ready-to-use vector or virus: ORF | Lenti- | Adeno- | AAV- | Retro- | Protein Vector - Browse All
- * Viral Packaging Services and High Titer Production Services also available.
Relevant External Links for NTM-AS1 Gene
- GeneLoc Exon Structure for
- NTM-AS1
Expression for NTM-AS1 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NTM-AS1
No Expression Related Data Available
Primer products for research
-
OriGene qPCR primer pairs for NTM-AS1
Gene Expression Assays for research
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NTM-AS1 Gene
Orthologs for NTM-AS1 Gene
No data available for Orthologs for NTM-AS1 Gene
Paralogs for NTM-AS1 Gene
No data available for Paralogs for NTM-AS1 Gene
Variants for NTM-AS1 Gene
All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).
Additional Variant Information for NTM-AS1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- NTM-AS1
SNP Genotyping and Copy Number Assays for research
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NTM-AS1 Gene
Disorders for NTM-AS1 Gene
Additional Disease Information for NTM-AS1
- Atlas
- ATLAS of Genetics and Cytogenetics in Oncology and Haematology
- Open Targets Platform
- Open Targets Platform
No disorders were found for NTM-AS1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NTM-AS1 Gene
Publications for NTM-AS1 Gene
- Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4
- The sequence of the human genome. (PMID: 11181995) Venter JC … Zhu X (Science (New York, N.Y.) 2001) 3
ExternalLinks
Products for NTM-AS1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for NTM-AS1
- Origene Custom Protein Services for NTM-AS1
- Origene shrna and RNAi products in human, mouse, rat for NTM-AS1
- Browse OriGene Inhibitory RNA Products For NTM-AS1
- OriGene qPCR primer pairs for NTM-AS1
- Browse CRISPR knockouts for NTM-AS1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For NTM-AS1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for NTM-AS1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for NTM-AS1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for NTM-AS1
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for NTM-AS1
Sources for NTM-AS1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM® (Updated: 05-Mar-2021)
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) MedlinePlus Genetics
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNAcentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Open Targets Platform
- (175) 5SRRNADB
- (176) snoDB
- (177) MirGeneDB