Aliases for NTF6A Gene

Aliases for NTF6A Gene

  • Neurotrophin 6 Alpha (Pseudogene) 2 3 5
  • Neurotrophin 5 Pseudogene 3
  • NT4 Pseudogene 3
  • PSI-NT4 3
  • NTF5P 3
  • NTF6 3

External Ids for NTF6A Gene

Previous HGNC Symbols for NTF6A Gene

  • NTF6

Previous GeneCards Identifiers for NTF6A Gene

  • GC19M050200
  • GC19M049896
  • GC19M054204
  • GC19M054220
  • GC19M049528

Summaries for NTF6A Gene

GeneCards Summary for NTF6A Gene

NTF6A (Neurotrophin 6 Alpha (Pseudogene)) is a Pseudogene.

Additional gene information for NTF6A Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NTF6A Gene

Genomics for NTF6A Gene

GeneHancer (GH) Regulatory Elements for NTF6A Gene

Promoters and enhancers for NTF6A Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J049024 Promoter 0.3 EPDnew 750.6 +1.8 1769 0.1 CGB3 NTF6A KCNA7 ENSG00000268655 ENSG00000267335
GH19J049026 Enhancer 0.2 Ensembl 750.6 -0.1 -79 0.4 CGB3 NTF6A ENSG00000268655 KCNA7 NTF6G ENSG00000267335
GH19J048958 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 14.8 +62.1 62093 10.2 ZNF785 SIN3A SP1 ZBTB40 SIX5 ZBTB6 LCORL MLX SMARCE1 RBPJ FTL ENSG00000267898 NONHSAG026207.2 NUP62 PRR12 PTOV1-AS2 GRWD1 PIH1D1 IRF3 SNORD35B
GH19J049874 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 14.6 -850.6 -850612 5.2 FOXK2 SIN3A SP1 ZBTB40 SREBF1 SIX5 ZBTB6 FOXA1 MLX RBPJ PNKP AKT1S1 TBC1D17 lnc-PNKP-8 piR-52792 NUP62 POLD1 PTOV1-AS2 ALDH16A1 SNORD35B
GH19J049116 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 14.7 -92.4 -92379 3.8 ZNF785 SIN3A ZBTB40 SP1 SREBF1 ZBTB6 RBPJ SMARCE1 POLR2A USF2 C19orf73 PPFIA3 ENSG00000269321 NUP62 SNRNP70 IRF3 PRR12 PTOV1-AS2 CPT1C SNORD35A
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NTF6A on UCSC Golden Path with GeneCards custom track

Genomic Locations for NTF6A Gene

Genomic Locations for NTF6A Gene
chr19:49,025,225-49,026,122
(GRCh38/hg38)
Size:
898 bases
Orientation:
Minus strand
chr19:49,528,482-49,529,379
(GRCh37/hg19)
Size:
898 bases
Orientation:
Minus strand

Genomic View for NTF6A Gene

Genes around NTF6A on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NTF6A Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NTF6A Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NTF6A Gene

Proteins for NTF6A Gene

No data available for DME Specific Peptides for NTF6A Gene

Domains & Families for NTF6A Gene

Gene Families for NTF6A Gene

genes like me logo Genes that share domains with NTF6A: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NTF6A Gene

Function for NTF6A Gene

Molecular function for NTF6A Gene

GENATLAS Biochemistry:
neurotrophic factor (neurotrophin) 6 cluster,including alpha like sequence

Phenotypes From GWAS Catalog for NTF6A Gene

Animal Model Products

CRISPR Products

No data available for Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NTF6A Gene

Localization for NTF6A Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NTF6A Gene

Pathways & Interactions for NTF6A Gene

PathCards logo

SuperPathways for NTF6A Gene

No Data Available

Gene Ontology (GO) - Biological Process for NTF6A Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NTF6A Gene

Drugs & Compounds for NTF6A Gene

No Compound Related Data Available

Transcripts for NTF6A Gene

mRNA/cDNA for NTF6A Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for NTF6A Gene

No ASD Table

Relevant External Links for NTF6A Gene

GeneLoc Exon Structure for
NTF6A
ECgene alternative splicing isoforms for
NTF6A

Expression for NTF6A Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NTF6A Gene

NURSA nuclear receptor signaling pathways regulating expression of NTF6A Gene:

NTF6A
genes like me logo Genes that share expression patterns with NTF6A: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NTF6A Gene

Orthologs for NTF6A Gene

Evolution for NTF6A Gene

ENSEMBL:
Gene Tree for NTF6A (if available)
TreeFam:
Gene Tree for NTF6A (if available)

No data available for Orthologs for NTF6A Gene

Paralogs for NTF6A Gene

No data available for Paralogs for NTF6A Gene

Variants for NTF6A Gene

Additional Variant Information for NTF6A Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NTF6A

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NTF6A Gene

Disorders for NTF6A Gene

No disorders were found for NTF6A Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NTF6A Gene

Publications for NTF6A Gene

  1. Human chromosome 19 contains the neurotrophin-5 gene locus and three related genes that may encode novel acidic neurotrophins. (PMID: 1496419) Berkemeier LR … Rosenthal A (Somatic cell and molecular genetics 1992) 2 3 23 56
  2. Mammalian neurotrophin-4: structure, chromosomal localization, tissue distribution, and receptor specificity. (PMID: 1313578) Ip NY … Squinto SP (Proceedings of the National Academy of Sciences of the United States of America 1992) 2 3 56

Products for NTF6A Gene

Sources for NTF6A Gene