Aliases for NRXN2-AS1 Gene

Data sources for NRXN2-AS1 Gene:

Subcategory (RNA class) for NRXN2-AS1 Gene

lncRNA

Aliases for NRXN2-AS1 Gene

External Ids for NRXN2-AS1 Gene

Previous GeneCards Identifiers for NRXN2-AS1 Gene

  • GC11U903160

Summaries for NRXN2-AS1 Gene

GeneCards Summary for NRXN2-AS1 Gene

NRXN2-AS1 (NRXN2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NRXN2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NRXN2-AS1 Gene

Genomics for NRXN2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NRXN2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH11J064643 Promoter/Enhancer 1.2 Ensembl ENCODE dbSUPER 250.7 -1.0 -982 2.4 SPI1 BHLHE40 REST ZNF148 GLIS1 ZNF398 GATA2 ZBTB7A CREB1 ZNF366 NRXN2-AS1 ZFTA NRXN2 lnc-RASGRP2-2 SLC22A12
GH11J064644 Enhancer 0.5 ENCODE 250.7 +1.2 1232 0.1 REST CTCF VEZF1 MEIS2 SIN3A RAD21 PKNOX1 ZNF600 NRXN2-AS1 lnc-SLC22A12-3 SLC22A12 NRXN2
GH11J064500 Promoter 0.9 Ensembl 11 -143.3 -143291 0.2 MNT BHLHE40 RAD51 ZNF395 REST VEZF1 YY1 ZFP91 USF2 CUX1 ENSG00000232500 HSALNG0084794 SF1 ZFPL1 POLA2 ENSG00000257086 NRXN2 PLCB3 SLC22A12 NRXN2-AS1
GH11J064501 Enhancer 0.8 ENCODE 11.3 -141.6 -141571 1.9 IKZF1 ZFP64 THAP11 SMAD4 SAP130 ZEB2 TAL1 RARA TEAD3 NCOR1 ENSG00000232500 HSALNG0084794 NRXN2-AS1 NRXN2 SLC22A11 SLC22A12 MIR1237 LINC02724 HSALNG0084797 RPS6KA4
GH11J064502 Enhancer 0.7 FANTOM5 11 -143.9 -143894 0.4 ZNF395 VEZF1 CUX1 POLR2A MYC MAX EP400 L3MBTL2 ZNF639 BRD4 ENSG00000232500 HSALNG0084794 NRXN2 SLC22A12 NRXN2-AS1 RASGRP2 piR-56341-027 SLC22A11 RPS6KA4
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NRXN2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NRXN2-AS1 Gene

Latest Assembly
chr11:64,643,792-64,659,682
(GRCh38/hg38)
Size:
15,891 bases
Orientation:
Plus strand

Previous Assembly
chr11:64,413,871-64,427,153
(GRCh37/hg19 by Ensembl)
Size:
13,283 bases
Orientation:
Plus strand

Genomic View for NRXN2-AS1 Gene

Genes around NRXN2-AS1 on UCSC Golden Path with GeneCards custom track
NRXN2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
NRXN2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NRXN2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NRXN2-AS1 Gene

Proteins for NRXN2-AS1 Gene

Post-translational modifications for NRXN2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NRXN2-AS1 Gene

Domains & Families for NRXN2-AS1 Gene

Gene Families for NRXN2-AS1 Gene

genes like me logo Genes that share domains with NRXN2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NRXN2-AS1 Gene

Function for NRXN2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NRXN2-AS1 Gene

Localization for NRXN2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NRXN2-AS1 Gene

Pathways & Interactions for NRXN2-AS1 Gene

PathCards logo

SuperPathways for NRXN2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NRXN2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NRXN2-AS1 Gene

Drugs & Compounds for NRXN2-AS1 Gene

No Compound Related Data Available

Transcripts for NRXN2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NRXN2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000060A110_9606 lncRNA 471 4

Ensembl: ENST00000433606 (view in UCSC) ,

LncBook: HSALNT0176636,

LNCipedia: lnc-SLC22A12-2:1,

NONCODE: NONHSAT022004.2,

URS00008B59AF_9606 lncRNA 712 3

LncBook: HSALNT0176634,

LNCipedia: lnc-SLC22A12-2:4,

NONCODE: NONHSAT022003.2,

URS00008B7FEB_9606 lncRNA 630 3

LncBook: HSALNT0176633,

LNCipedia: lnc-SLC22A12-2:3,

NONCODE: NONHSAT022002.2,

URS00008BD584_9606 lncRNA 442 3

LncBook: HSALNT0176632,

LNCipedia: lnc-SLC22A12-2:2,

NONCODE: NONHSAT022001.2,

URS00009B0CA4_9606 lncRNA 556 2

LncBook: HSALNT0176631,

NONCODE: NONHSAT159220.1,

NRXN2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for NRXN2-AS1 Gene

No ASD Table

Relevant External Links for NRXN2-AS1 Gene

GeneLoc Exon Structure for
NRXN2-AS1

No data available for mRNA/cDNA for NRXN2-AS1 Gene

Expression for NRXN2-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NRXN2-AS1 Gene

Orthologs for NRXN2-AS1 Gene

Evolution for NRXN2-AS1 Gene

ENSEMBL:
Gene Tree for NRXN2-AS1 (if available)
TreeFam:
Gene Tree for NRXN2-AS1 (if available)

No data available for Orthologs for NRXN2-AS1 Gene

Paralogs for NRXN2-AS1 Gene

No data available for Paralogs for NRXN2-AS1 Gene

Variants for NRXN2-AS1 Gene

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for NRXN2-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Additional Variant Information for NRXN2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NRXN2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NRXN2-AS1 Gene

Disorders for NRXN2-AS1 Gene

Additional Disease Information for NRXN2-AS1

Open Targets Platform
Open Targets Platform

No disorders were found for NRXN2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NRXN2-AS1 Gene

Publications for NRXN2-AS1 Gene

No publications were found for NRXN2-AS1 Gene.

No data available for Mastermind for NRXN2-AS1 Gene

Products for NRXN2-AS1 Gene

Sources for NRXN2-AS1 Gene