NRG3-AS1 Gene (RNA Gene)

NRG3 Antisense RNA 1

GC10M082225
GIFtS:
12

Aliases for NRG3-AS1 Gene

Subcategory (RNA class) for NRG3-AS1 Gene

lncRNA

Quality Score for this RNA gene is

15

Aliases for NRG3-AS1 Gene

  • NRG3 Antisense RNA 1 2 3 5
  • NRG3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NRG3-AS1 2 170
  • Chromosome 10 Open Reading Frame 100 2
  • Em:AC010157.1 3
  • NONHSAG006385 94
  • HSALNG0079265 169
  • C10orf100 3

External Ids for NRG3-AS1 Gene

Previous HGNC Symbols for NRG3-AS1 Gene

  • C10orf100

Previous GeneCards Identifiers for NRG3-AS1 Gene

  • GC10M083988

Summaries for NRG3-AS1 Gene

GeneCards Summary for NRG3-AS1 Gene

NRG3-AS1 (NRG3 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NRG3-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NRG3-AS1 Gene

Genomics for NRG3-AS1 Gene

GeneHancer (GH) Regulatory Elements for NRG3-AS1 Gene

Promoters and enhancers for NRG3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH10J082288 Enhancer 0.3 ENCODE 10.9 -55.8 -55821 1.3 FOS ENSG00000229458 NRG3-AS1 RNU6-441P piR-48373-001 NRG3
GH10J082176 Enhancer 0.3 Ensembl 10.9 +56.2 56219 0.2 POLR2A ENSG00000229458 NRG3-AS1 ENSG00000285739 L13713-030 NRG3
GH10J082211 Enhancer 0.2 Ensembl 12.4 +21.4 21419 0.6 ENSG00000285739 NRG3-AS1 ENSG00000229458 NRG3
GH10J082200 Enhancer 0.2 Ensembl 11.6 +32.5 32519 0.4 ENSG00000229458 NRG3-AS1 ENSG00000285739 L13713-030 NRG3
GH10J082251 Enhancer 0.6 Ensembl ENCODE 0.4 -18.7 -18681 1.6 IKZF1 EZH2 BCL11A ENSG00000229458 RNU6-441P NRG3-AS1 piR-48373-001 NRG3
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NRG3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NRG3-AS1 Gene

Genomic Locations for NRG3-AS1 Gene
chr10:82,228,985-82,232,920
(GRCh38/hg38)
Size:
3,936 bases
Orientation:
Minus strand
chr10:83,988,741-83,992,676
(GRCh37/hg19)
Size:
3,936 bases
Orientation:
Minus strand

Genomic View for NRG3-AS1 Gene

Genes around NRG3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NRG3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NRG3-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for NRG3-AS1 Gene

Proteins for NRG3-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for NRG3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NRG3-AS1 Gene

Domains & Families for NRG3-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NRG3-AS1 Gene

Function for NRG3-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NRG3-AS1 Gene

Localization for NRG3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NRG3-AS1 Gene

Pathways & Interactions for NRG3-AS1 Gene

PathCards logo

SuperPathways for NRG3-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NRG3-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NRG3-AS1 Gene

Drugs & Compounds for NRG3-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for NRG3-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for NRG3-AS1 Gene

(1) REFSEQ mRNAs :
(5) Additional mRNA sequences :
(3) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(8) RNACentral transcripts :
(7) NONCODE transcripts :
(8) LncBook transcripts :
(6) LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for NRG3-AS1 Gene

No ASD Table

Relevant External Links for NRG3-AS1 Gene

GeneLoc Exon Structure for
NRG3-AS1
ECgene alternative splicing isoforms for
NRG3-AS1

Expression for NRG3-AS1 Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NRG3-AS1 Gene

mRNA expression in normal human tissues for NRG3-AS1 Gene
mRNA expression by GTEx for NRG3-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NRG3-AS1 Gene

This gene is overexpressed in Testis (x41.2) and Pituitary (x5.0).
genes like me logo Genes that share expression patterns with NRG3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NRG3-AS1 Gene

Orthologs for NRG3-AS1 Gene

Evolution for NRG3-AS1 Gene

ENSEMBL:
Gene Tree for NRG3-AS1 (if available)
TreeFam:
Gene Tree for NRG3-AS1 (if available)

No data available for Orthologs for NRG3-AS1 Gene

Paralogs for NRG3-AS1 Gene

No data available for Paralogs for NRG3-AS1 Gene

Variants for NRG3-AS1 Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations from dbSNP and Humsavar for NRG3-AS1 Gene

SNP ID Clin Chr 10 pos Variation AA Info Type
rs1000084391 -- 82,229,236(-) A/C intron_variant
rs1000329804 -- 82,229,634(-) C/T intron_variant
rs1000434994 -- 82,229,539(-) T/A intron_variant
rs1001516056 -- 82,233,281(-) T/C upstream_transcript_variant
rs1001569900 -- 82,233,104(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for NRG3-AS1 Gene

Variant ID Type Subtype PubMed ID
esv3891873 CNV gain 25118596
esv3891875 CNV loss 25118596
nsv1141879 OTHER inversion 24896259
nsv551704 CNV loss 21841781

Additional Variant Information for NRG3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NRG3-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NRG3-AS1 Gene

Disorders for NRG3-AS1 Gene

Additional Disease Information for NRG3-AS1

ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for NRG3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NRG3-AS1 Gene

Publications for NRG3-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 56
  2. A transcript finishing initiative for closing gaps in the human transcriptome. (PMID: 15197164) Sogayar MC … Ludwig-FAPESP Transcript Finishing Initiative (Genome research 2004) 3 56
  3. Initial assessment of human gene diversity and expression patterns based upon 83 million nucleotides of cDNA sequence. (PMID: 7566098) Adams MD … White O (Nature 1995) 3 56

No data available for External Links for NRG3-AS1 Gene

Products for NRG3-AS1 Gene

Sources for NRG3-AS1 Gene