Free for academic non-profit institutions. Other users need a Commercial license

Aliases for NRG1-IT3 Gene

Subcategory (RNA class) for NRG1-IT3 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NRG1-IT3 Gene

  • NRG1 Intronic Transcript 3 2 3 5
  • NRG1 Intronic Transcript 3 (Non-Protein Coding) 2

External Ids for NRG1-IT3 Gene

Previous GeneCards Identifiers for NRG1-IT3 Gene

  • GC08P032299

Summaries for NRG1-IT3 Gene

GeneCards Summary for NRG1-IT3 Gene

NRG1-IT3 (NRG1 Intronic Transcript 3) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NRG1-IT3 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NRG1-IT3 Gene

Genomics for NRG1-IT3 Gene

GeneHancer (GH) Regulatory Elements for NRG1-IT3 Gene

Promoters and enhancers for NRG1-IT3 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08I032432 Enhancer 0.7 Ensembl ENCODE 0.4 -7.5 -7516 1.7 SP1 JUND FOSL2 YY1 LOC105379361 NRG1-IT3 GC08M032358 NRG1
GH08I032546 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 0.1 +110.0 109963 9.3 FOXA2 SIN3A ZNF2 YY1 ZNF143 FOS DEK SP3 RXRA MIER2 NRG1 NRG1-IT3 GC08M032358
GH08I032429 Enhancer 0.4 ENCODE 0.4 -10.8 -10758 1.7 CEBPB EP300 LOC105379361 NRG1 NRG1-IT3 GC08M032358
GH08I032430 Enhancer 0.4 ENCODE 0.4 -11.9 -11933 0.2 ATF4 CEBPB NFE2L2 LOC105379361 NRG1-IT3 GC08M032358 NRG1
GH08I032486 Enhancer 0.7 Ensembl ENCODE 0.2 +46.8 46837 2.1 POLR2A MAX MYC EZH2 NRG1-IT3 GC08M032358 NRG1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NRG1-IT3 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NRG1-IT3 Gene

Genomic Locations for NRG1-IT3 Gene
chr8:32,440,746-32,442,725
(GRCh38/hg38)
Size:
1,980 bases
Orientation:
Plus strand
chr8:32,298,262-32,300,241
(GRCh37/hg19)

Genomic View for NRG1-IT3 Gene

Genes around NRG1-IT3 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NRG1-IT3 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NRG1-IT3 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NRG1-IT3 Gene

Proteins for NRG1-IT3 Gene

Post-translational modifications for NRG1-IT3 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NRG1-IT3 Gene

Domains & Families for NRG1-IT3 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NRG1-IT3 Gene

Function for NRG1-IT3 Gene

Phenotypes From GWAS Catalog for NRG1-IT3 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NRG1-IT3 Gene

Localization for NRG1-IT3 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NRG1-IT3 Gene

Pathways & Interactions for NRG1-IT3 Gene

SuperPathways for NRG1-IT3 Gene

No Data Available

Interacting Proteins for NRG1-IT3 Gene

Gene Ontology (GO) - Biological Process for NRG1-IT3 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NRG1-IT3 Gene

Drugs & Compounds for NRG1-IT3 Gene

No Compound Related Data Available

Transcripts for NRG1-IT3 Gene

mRNA/cDNA for NRG1-IT3 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NRG1-IT3 Gene

NRG1 intronic transcript 3 (non-protein coding):
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NRG1-IT3 Gene

No ASD Table

Relevant External Links for NRG1-IT3 Gene

GeneLoc Exon Structure for
NRG1-IT3
ECgene alternative splicing isoforms for
NRG1-IT3

Expression for NRG1-IT3 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NRG1-IT3 Gene

mRNA differential expression in normal tissues according to GTEx for NRG1-IT3 Gene

This gene is overexpressed in Testis (x53.0).

SOURCE GeneReport for Unigene cluster for NRG1-IT3 Gene:

Hs.147060
genes like me logo Genes that share expression patterns with NRG1-IT3: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NRG1-IT3 Gene

Orthologs for NRG1-IT3 Gene

Evolution for NRG1-IT3 Gene

ENSEMBL:
Gene Tree for NRG1-IT3 (if available)
TreeFam:
Gene Tree for NRG1-IT3 (if available)

No data available for Orthologs for NRG1-IT3 Gene

Paralogs for NRG1-IT3 Gene

No data available for Paralogs for NRG1-IT3 Gene

Variants for NRG1-IT3 Gene

Sequence variations from dbSNP and Humsavar for NRG1-IT3 Gene

SNP ID Clin Chr 08 pos Variation AA Info Type
rs1000028656 -- 32,441,606(+) G/A intron_variant
rs1000142961 -- 32,441,913(+) C/T intron_variant
rs1000890496 -- 32,442,903(+) C/A downstream_transcript_variant
rs1001151450 -- 32,440,445(+) C/T upstream_transcript_variant
rs1003609818 -- 32,442,333(+) A/G intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NRG1-IT3 Gene

Variant ID Type Subtype PubMed ID
esv3576537 CNV gain 25503493
esv3616810 CNV gain 21293372

Additional Variant Information for NRG1-IT3 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NRG1-IT3

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NRG1-IT3 Gene

Disorders for NRG1-IT3 Gene

Additional Disease Information for NRG1-IT3

No disorders were found for NRG1-IT3 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NRG1-IT3 Gene

Publications for NRG1-IT3 Gene

No publications were found for NRG1-IT3 Gene.

Products for NRG1-IT3 Gene

Sources for NRG1-IT3 Gene

Content
Loading form....