Aliases for NRG1-IT1 Gene

Subcategory (RNA class) for NRG1-IT1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for NRG1-IT1 Gene

  • NRG1 Intronic Transcript 1 2 3 5
  • NRG1-IT1 2 5 165
  • NRG1 Intronic Transcript 1 (Non-Protein Coding) 2 3
  • NONHSAG049931.2 91
  • HSALNG0064423 164

External Ids for NRG1-IT1 Gene

Previous GeneCards Identifiers for NRG1-IT1 Gene

  • GC08P031884

Summaries for NRG1-IT1 Gene

GeneCards Summary for NRG1-IT1 Gene

NRG1-IT1 (NRG1 Intronic Transcript 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NRG1-IT1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NRG1-IT1 Gene

Genomics for NRG1-IT1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NRG1-IT1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH08J032023 Enhancer 0.3 Ensembl CraniofacialAtlas 600.7 -1.8 -1835 1 NRG1-IT1 LOC107986936 NRG1 ENSG00000286131
GH08J032072 Enhancer 0.3 Ensembl 0.3 +47.6 47565 1 RCOR1 CHD2 piR-31534-654 NRG1-IT1 lnc-WRN-10 NRG1 ENSG00000286131
GH08J032110 Enhancer 0.4 Ensembl 0.2 +85.0 84965 0.6 ZNF316 MAFF MAFK EMSY lnc-WRN-10 piR-31534-654 NRG1-IT1 NRG1 ENSG00000286131
GH08J032138 Enhancer 0.3 Ensembl 0.1 +112.9 112865 1.2 NFE2 NFE2L2 lnc-WRN-10 piR-31534-654 NRG1-IT1 NRG1 ENSG00000286131
GH08J032120 Enhancer 0.3 Ensembl 0.2 +95.4 95365 0.6 MAX lnc-WRN-10 piR-31534-654 NRG1-IT1 NRG1 ENSG00000286131
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NRG1-IT1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NRG1-IT1 Gene

Genomic Locations for NRG1-IT1 Gene
chr8:32,025,736-32,139,495
(GRCh38/hg38)
Size:
113,760 bases
Orientation:
Plus strand
chr8:31,883,735-31,996,991
(GRCh37/hg19)
Size:
113,257 bases
Orientation:
Plus strand

Genomic View for NRG1-IT1 Gene

Genes around NRG1-IT1 on UCSC Golden Path with GeneCards custom track
NRG1-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
NRG1-IT1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NRG1-IT1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NRG1-IT1 Gene

Proteins for NRG1-IT1 Gene

Post-translational modifications for NRG1-IT1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NRG1-IT1 Gene

Domains & Families for NRG1-IT1 Gene

Gene Families for NRG1-IT1 Gene

genes like me logo Genes that share domains with NRG1-IT1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NRG1-IT1 Gene

Function for NRG1-IT1 Gene

Phenotypes From GWAS Catalog for NRG1-IT1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NRG1-IT1 Gene

Localization for NRG1-IT1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NRG1-IT1 Gene

Pathways & Interactions for NRG1-IT1 Gene

PathCards logo

SuperPathways for NRG1-IT1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NRG1-IT1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NRG1-IT1 Gene

Drugs & Compounds for NRG1-IT1 Gene

No Compound Related Data Available

Transcripts for NRG1-IT1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NRG1-IT1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00000A6F22_9606 lncRNA 758 4

Ensembl: ENST00000520444 (view in UCSC) ,

LncBook: HSALNT0135064,

LNCipedia: NRG1-IT1:8,

NONCODE: NONHSAT125928.2,

URS000036E945_9606 lncRNA 742 4

Ensembl: ENST00000521463 (view in UCSC) ,

LncBook: HSALNT0135061,

LNCipedia: NRG1-IT1:5,

NONCODE: NONHSAT125925.2,

URS0000759D4D_9606 lncRNA 399 4

RefSeq: NR_104158,

LncBook: HSALNT0135051,

LNCipedia: NRG1-IT1:1,

NONCODE: NONHSAT215640.1,

URS00002BEC72_9606 lncRNA 352 4

Ensembl: ENST00000523785 (view in UCSC) ,

LncBook: HSALNT0135066,

LNCipedia: NRG1-IT1:10,

NONCODE: NONHSAT125931.2,

URS000075D4D3_9606 lncRNA 601 3

HGNC: 43633,

RefSeq: NR_104156,

LNCipedia: NRG1-IT1:4,

NRG1-IT1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NRG1-IT1 Gene

5 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for NRG1-IT1 Gene

No ASD Table

Relevant External Links for NRG1-IT1 Gene

GeneLoc Exon Structure for
NRG1-IT1

Expression for NRG1-IT1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NRG1-IT1 Gene

mRNA differential expression in normal tissues according to GTEx for NRG1-IT1 Gene

This gene is overexpressed in Testis (x50.6).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NRG1-IT1

SOURCE GeneReport for Unigene cluster for NRG1-IT1 Gene:

Hs.97362
genes like me logo Genes that share expression patterns with NRG1-IT1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NRG1-IT1 Gene

Orthologs for NRG1-IT1 Gene

Evolution for NRG1-IT1 Gene

ENSEMBL:
Gene Tree for NRG1-IT1 (if available)
TreeFam:
Gene Tree for NRG1-IT1 (if available)

No data available for Orthologs for NRG1-IT1 Gene

Paralogs for NRG1-IT1 Gene

No data available for Paralogs for NRG1-IT1 Gene

Variants for NRG1-IT1 Gene

Additional dbSNP identifiers (rs#s) for NRG1-IT1 Gene

Structural Variations from Database of Genomic Variants (DGV) for NRG1-IT1 Gene

Variant ID Type Subtype PubMed ID
esv3616806 CNV loss 21293372
esv3616807 CNV loss 21293372
nsv1117817 CNV deletion 24896259
nsv465632 CNV gain 19166990
nsv470207 CNV gain 18288195
nsv474487 CNV novel sequence insertion 20440878
nsv528531 CNV loss 19592680
nsv610880 CNV gain 21841781
nsv831282 CNV gain 17160897

Additional Variant Information for NRG1-IT1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NRG1-IT1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for NRG1-IT1 Gene

Disorders for NRG1-IT1 Gene

No disorders were found for NRG1-IT1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NRG1-IT1 Gene

Publications for NRG1-IT1 Gene

No publications were found for NRG1-IT1 Gene.

Products for NRG1-IT1 Gene

Sources for NRG1-IT1 Gene