Aliases for NR4A1AS Gene

Subcategory (RNA class) for NR4A1AS Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for NR4A1AS Gene

  • NR4A1 Antisense RNA 2 3 5
  • NR4A1-AS1 2 3
  • NR4A1AS 2 5
  • NONHSAG011179.2 91
  • HSALNG0091146 164
  • Lnc-KRT80-4 165

External Ids for NR4A1AS Gene

Previous GeneCards Identifiers for NR4A1AS Gene

  • GC12U902883

Summaries for NR4A1AS Gene

GeneCards Summary for NR4A1AS Gene

NR4A1AS (NR4A1 Antisense RNA) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NR4A1AS Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NR4A1AS Gene

Genomics for NR4A1AS Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NR4A1AS Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J052049 Promoter/Enhancer 2.8 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +2.0 1990 16.4 SP1 HNRNPL CREB1 TEAD4 ZNF629 TFE3 LEF1 SOX13 IKZF1 CTCF MF688637 NR4A1AS NR4A1 HNRNPA3P10 OR7E47P KRT6C EIF4B LOC107984510 ATG101
GH12J052515 Promoter/Enhancer 1.8 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 5.2 -461.5 -461541 11.4 CREB1 ZBTB33 JUND ZIC2 SCRT2 MNT ESR1 CTBP1 NR3C1 FOS KRT5 HSALNG0091190 lnc-KRT6A-1 KRT6A KRT6C KRT71 KRT74 KRT84 KRT2 KRT4
GH12J052506 Enhancer 0.8 Ensembl ENCODE dbSUPER 5.9 -447.7 -447688 0.8 CTCF SMC3 YY1 RAD21 ZNF660 NR3C1 KRT6C KRT71 KRT82 KRT84 KRT78 KRT4 NR4A1AS KRT5 KRT6A JA662198
GH12J052513 Enhancer 0.7 ENCODE dbSUPER 5.2 -454.5 -454463 1.2 NFE2 ZNF316 MAFG CEBPG ATF4 CEBPB ATF3 BACH1 EMSY KRT6A KRT71 KRT6C KRT5 NR4A1AS lnc-KRT6A-1 JA662198
GH12J052066 Enhancer 0.7 Ensembl dbSUPER 0.4 -7.5 -7498 0.4 CREB1 ZNF600 KAT7 ZBTB17 CTCF ZNF513 ATF3 RAD21 SMC3 OR7E47P ATG101 lnc-ATG101-1 NR4A1AS NR4A1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NR4A1AS on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NR4A1AS Gene

Genomic Locations for NR4A1AS Gene
chr12:52,058,459-52,059,503
(GRCh38/hg38)
Size:
1,045 bases
Orientation:
Minus strand
chr12:52,452,243-52,453,287
(GRCh37/hg19)
Size:
1,045 bases
Orientation:
Minus strand

Genomic View for NR4A1AS Gene

Genes around NR4A1AS on UCSC Golden Path with GeneCards custom track
NR4A1AS in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
NR4A1AS Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NR4A1AS Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

No data available for RefSeq DNA sequence for NR4A1AS Gene

Proteins for NR4A1AS Gene

Post-translational modifications for NR4A1AS Gene

No Post-translational modifications

No data available for DME Specific Peptides for NR4A1AS Gene

Domains & Families for NR4A1AS Gene

Gene Families for NR4A1AS Gene

genes like me logo Genes that share domains with NR4A1AS: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NR4A1AS Gene

Function for NR4A1AS Gene

Phenotypes From GWAS Catalog for NR4A1AS Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NR4A1AS Gene

Localization for NR4A1AS Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NR4A1AS Gene

Pathways & Interactions for NR4A1AS Gene

PathCards logo

SuperPathways for NR4A1AS Gene

No Data Available

Gene Ontology (GO) - Biological Process for NR4A1AS Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NR4A1AS Gene

Drugs & Compounds for NR4A1AS Gene

No Compound Related Data Available

Transcripts for NR4A1AS Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NR4A1AS Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005BDB7C_9606 lncRNA 687 4

HGNC: 54409,

Ensembl: ENST00000564363 (view in UCSC) ,

LNCipedia: lnc-KRT80-4:1,

NONCODE: NONHSAT028325.2,

URS0000397CFA_9606 lncRNA 542 4

Ensembl: ENST00000564531 (view in UCSC) ,

LncBook: HSALNT0189108,

LNCipedia: lnc-KRT80-4:2,

NONCODE: NONHSAT028324.2,

NR4A1AS in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Alternative Splicing Database (ASD) splice patterns (SP) for NR4A1AS Gene

No ASD Table

Relevant External Links for NR4A1AS Gene

GeneLoc Exon Structure for
NR4A1AS

No data available for mRNA/cDNA for NR4A1AS Gene

Expression for NR4A1AS Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NR4A1AS Gene

Orthologs for NR4A1AS Gene

Evolution for NR4A1AS Gene

ENSEMBL:
Gene Tree for NR4A1AS (if available)
TreeFam:
Gene Tree for NR4A1AS (if available)

No data available for Orthologs for NR4A1AS Gene

Paralogs for NR4A1AS Gene

No data available for Paralogs for NR4A1AS Gene

Variants for NR4A1AS Gene

Additional Variant Information for NR4A1AS Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NR4A1AS

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NR4A1AS Gene

Disorders for NR4A1AS Gene

Additional Disease Information for NR4A1AS

No disorders were found for NR4A1AS Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NR4A1AS Gene

Publications for NR4A1AS Gene

  1. A novel lncRNA NR4A1AS up-regulates orphan nuclear receptor NR4A1 expression by blocking UPF1-mediated mRNA destabilization in colorectal cancer. (PMID: 31253658) Xie X … Tang A (Clinical science (London, England : 1979) 2019) 2 3

No data available for Mastermind for NR4A1AS Gene

Products for NR4A1AS Gene

Sources for NR4A1AS Gene