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Aliases for NPSR1-AS1 Gene

Subcategory (RNA class) for NPSR1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for NPSR1-AS1 Gene

  • NPSR1 Antisense RNA 1 2 3 5
  • Asthma-Associated Alternatively Spliced Gene 1 2 3
  • NPSR1 Antisense RNA 1 (Non-Protein Coding) 2 3
  • AAA1 3

External Ids for NPSR1-AS1 Gene

Summaries for NPSR1-AS1 Gene

Entrez Gene Summary for NPSR1-AS1 Gene

  • This gene is located within a region that has been associated with asthma susceptibility. The locus is considered non-protein-coding based on lack of protein homology and a lack of experimental support for an encoded protein. Three alternatively spliced transcript variants have been identified for this gene. [provided by RefSeq, May 2010]

GeneCards Summary for NPSR1-AS1 Gene

NPSR1-AS1 (NPSR1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with NPSR1-AS1 include Asthma.

Additional gene information for NPSR1-AS1 Gene

No data available for CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPSR1-AS1 Gene

Genomics for NPSR1-AS1 Gene

GeneHancer (GH) Regulatory Elements for NPSR1-AS1 Gene

Promoters and enhancers for NPSR1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH07J034851 Enhancer 1 Ensembl ENCODE 0.4 +19.1 19114 2.1 BACH1 MAFK TRIM24 SMARCA4 MTA1 FOSL2 IKZF1 PRDM10 NFE2L2 ATF1 GC07P034858 NPSR1-AS1 GC07P034789 NPSR1
GH07J034890 Enhancer 0.7 Ensembl ENCODE 0.3 -20.1 -20083 1.5 CUX1 FOSL2 JUND FOS ZNF398 ENSG00000251802 NPSR1-AS1
GH07J034845 Enhancer 0.7 Ensembl ENCODE 0.3 +25.6 25581 0.8 ZNF24 NFE2 ZFP91 RAD21 BACH1 JUND GC07P034858 NPSR1-AS1 GC07P034789 NPSR1
GH07J034814 Enhancer 0.9 Ensembl ENCODE 0.2 +56.9 56880 1 SP5 ZNF644 KAT8 CEBPA RXRB IRF2 SOX13 KAT7 FOXA2 ZBTB25 GC07P034789 GC07P034858 NPSR1-AS1 NPSR1
GH07J034754 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 0.1 +114.2 114203 4.8 ELF3 CTCF CEBPG ZNF687 HNF1A MLLT1 ZNF644 RAD21 KAT8 IKZF1 NPSR1 RN7SL132P GC07P034789 NPSR1-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NPSR1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NPSR1-AS1 Gene

Genomic Locations for NPSR1-AS1 Gene
chr7:34,346,512-34,871,582
(GRCh38/hg38)
Size:
525,071 bases
Orientation:
Minus strand
chr7:34,386,124-34,911,194
(GRCh37/hg19)
Size:
525,071 bases
Orientation:
Minus strand

Genomic View for NPSR1-AS1 Gene

Genes around NPSR1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NPSR1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NPSR1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPSR1-AS1 Gene

Function for NPSR1-AS1 Gene

Phenotypes From GWAS Catalog for NPSR1-AS1 Gene

Phenotypes for NPSR1-AS1 Gene

genes like me logo Genes that share phenotypes with NPSR1-AS1: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for NPSR1-AS1

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPSR1-AS1 Gene

Localization for NPSR1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NPSR1-AS1 Gene

Pathways & Interactions for NPSR1-AS1 Gene

PathCards logo

SuperPathways for NPSR1-AS1 Gene

No Data Available

Interacting Proteins for NPSR1-AS1 Gene

Gene Ontology (GO) - Biological Process for NPSR1-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NPSR1-AS1 Gene

Drugs & Compounds for NPSR1-AS1 Gene

No Compound Related Data Available

Transcripts for NPSR1-AS1 Gene

Unigene Clusters for NPSR1-AS1 Gene

NPSR1 antisense RNA 1:
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for NPSR1-AS1

Alternative Splicing Database (ASD) splice patterns (SP) for NPSR1-AS1 Gene

No ASD Table

Relevant External Links for NPSR1-AS1 Gene

GeneLoc Exon Structure for
NPSR1-AS1
ECgene alternative splicing isoforms for
NPSR1-AS1

Expression for NPSR1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NPSR1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NPSR1-AS1 Gene

This gene is overexpressed in Kidney - Cortex (x11.9), Muscle - Skeletal (x5.1), and Brain - Anterior cingulate cortex (BA24) (x4.3).

SOURCE GeneReport for Unigene cluster for NPSR1-AS1 Gene:

Hs.487951
genes like me logo Genes that share expression patterns with NPSR1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NPSR1-AS1 Gene

Orthologs for NPSR1-AS1 Gene

Evolution for NPSR1-AS1 Gene

ENSEMBL:
Gene Tree for NPSR1-AS1 (if available)
TreeFam:
Gene Tree for NPSR1-AS1 (if available)

No data available for Orthologs for NPSR1-AS1 Gene

Paralogs for NPSR1-AS1 Gene

No data available for Paralogs for NPSR1-AS1 Gene

Variants for NPSR1-AS1 Gene

Sequence variations from dbSNP and Humsavar for NPSR1-AS1 Gene

SNP ID Clin Chr 07 pos Variation AA Info Type
rs324981 risk-factor, Asthma-related traits, susceptibility to, 2 34,778,501(-) A/T genic_upstream_transcript_variant, intron_variant
rs1000008880 -- 34,604,211(-) C/T genic_downstream_transcript_variant, intron_variant
rs1000033718 -- 34,439,362(-) A/C genic_downstream_transcript_variant, intron_variant
rs1000034503 -- 34,733,076(-) T/C intron_variant
rs1000035809 -- 34,398,763(-) C/T genic_downstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NPSR1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1080e201 CNV deletion 23290073
dgv1098n67 CNV gain 20364138
dgv1099n67 CNV gain 20364138
dgv1192e199 CNV deletion 23128226
dgv1882e212 CNV loss 25503493
dgv1883e212 CNV loss 25503493
dgv1884e212 CNV loss 25503493
esv2420974 CNV deletion 18987734
esv2432833 CNV deletion 19546169
esv2488425 CNV deletion 19546169
esv2675774 CNV deletion 23128226
esv2734238 CNV deletion 23290073
esv2734240 CNV deletion 23290073
esv2734241 CNV deletion 23290073
esv3305722 CNV mobile element insertion 20981092
esv3404767 CNV insertion 20981092
esv3541462 CNV deletion 23714750
esv3541463 CNV deletion 23714750
esv3541464 CNV deletion 23714750
esv3571735 CNV loss 25503493
esv3571739 CNV loss 25503493
esv3571743 CNV loss 25503493
esv3612750 OTHER inversion 21293372
esv3612772 CNV loss 21293372
esv3612791 CNV loss 21293372
esv3612792 CNV gain 21293372
esv3612796 CNV loss 21293372
esv3612800 CNV loss 21293372
esv3612801 CNV loss 21293372
esv3612803 CNV loss 21293372
esv3891097 CNV gain 25118596
nsv1020423 CNV gain 25217958
nsv1024493 CNV loss 25217958
nsv1030687 CNV loss 25217958
nsv1075024 CNV deletion 25765185
nsv1116563 OTHER inversion 24896259
nsv1132047 CNV deletion 24896259
nsv1132048 CNV deletion 24896259
nsv1135982 CNV deletion 24896259
nsv1140376 OTHER inversion 24896259
nsv366629 CNV deletion 16902084
nsv436907 CNV insertion 17901297
nsv517860 CNV loss 19592680
nsv523149 CNV loss 19592680
nsv523190 CNV gain 19592680
nsv523351 CNV gain 19592680
nsv5692 CNV deletion 18451855
nsv5693 CNV deletion 18451855
nsv606614 CNV loss 21841781
nsv606615 CNV loss 21841781
nsv606616 CNV loss 21841781
nsv818494 CNV loss 17921354
nsv819499 CNV loss 19587683
nsv830950 CNV gain 17160897
nsv830951 CNV loss 17160897
nsv957614 CNV deletion 24416366
nsv970458 CNV duplication 23825009

Additional Variant Information for NPSR1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NPSR1-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NPSR1-AS1 Gene

Disorders for NPSR1-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for NPSR1-AS1 Gene - From: DISEASES and GeneCards

Disorder Aliases PubMed IDs
asthma
  • asthma, susceptibility to
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for NPSR1-AS1

genes like me logo Genes that share disorders with NPSR1-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NPSR1-AS1 Gene

Publications for NPSR1-AS1 Gene

  1. Characterization of a common susceptibility locus for asthma-related traits. (PMID: 15073379) Laitinen T … Kere J (Science (New York, N.Y.) 2004) 2 3 58
  2. Loci associated with N-glycosylation of human immunoglobulin G show pleiotropy with autoimmune diseases and haematological cancers. (PMID: 23382691) Lauc G … Rudan I (PLoS genetics 2013) 3 58
  3. Replication of genetic association studies in asthma and related phenotypes. (PMID: 20395963) Undarmaa S … Suzuki Y (Journal of human genetics 2010) 3 58
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for NPSR1-AS1 Gene

Sources for NPSR1-AS1 Gene

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