Aliases for NPM1P40 Gene

Aliases for NPM1P40 Gene

  • Nucleophosmin 1 Pseudogene 40 2 3 5
  • Nucleophosmin 1 (Nucleolar Phosphoprotein B23, Numatrin) Pseudogene 40 2 3
  • Nucleophosmin (Nucleolar Phosphoprotein B23, Numatrin) Pseudogene 3

External Ids for NPM1P40 Gene

Summaries for NPM1P40 Gene

GeneCards Summary for NPM1P40 Gene

NPM1P40 (Nucleophosmin 1 Pseudogene 40) is a Pseudogene.

Additional gene information for NPM1P40 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NPM1P40 Gene

Genomics for NPM1P40 Gene

GeneHancer (GH) Regulatory Elements for NPM1P40 Gene

Promoters and enhancers for NPM1P40 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J203266 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 0.4 +12.5 12524 2.8 CTCF CC2D1A ELF1 L3MBTL2 RAD21 HDGF POLR2A MLLT1 SP7 SMARCA4 LINC01136 BTG2 RNU6-487P PPFIA4 FMOD ENSG00000229652 ADORA1 ENSG00000224671 OPTC CHI3L1
GH01J203263 Enhancer 1.1 FANTOM5 Ensembl ENCODE dbSUPER 0.4 +8.5 8484 2 MLLT1 PRDM1 IKZF1 ZNF512 IKZF2 DPF2 ZBTB17 ZFHX2 IRF4 ATF2 RNU6-487P LINC01136 BTG2 ENSG00000229652 FMOD ADORA1 ENSG00000224671 OPTC CHI3L1 PRELP
GH01J203271 Promoter/Enhancer 0.7 Ensembl dbSUPER 0.4 +14.7 14667 0.4 ATF2 CTCF CHIT1 LINC01353 lnc-CHIT1-2 NPM1P40
GH01J203265 Enhancer 0.4 Ensembl dbSUPER 0.4 +10.1 10067 0.4 ZNF512 RNU6-487P LINC01136 BTG2 ENSG00000229652 FMOD ADORA1 ENSG00000224671 OPTC CHI3L1 PRELP
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NPM1P40 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NPM1P40 Gene

Genomic Locations for NPM1P40 Gene
chr1:203,255,734-203,256,486
(GRCh38/hg38)
Size:
753 bases
Orientation:
Plus strand
chr1:203,224,862-203,225,614
(GRCh37/hg19)
Size:
753 bases
Orientation:
Plus strand

Genomic View for NPM1P40 Gene

Genes around NPM1P40 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NPM1P40 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NPM1P40 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPM1P40 Gene

Proteins for NPM1P40 Gene

Post-translational modifications for NPM1P40 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPM1P40 Gene

Domains & Families for NPM1P40 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NPM1P40 Gene

Function for NPM1P40 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPM1P40 Gene

Localization for NPM1P40 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NPM1P40 Gene

Pathways & Interactions for NPM1P40 Gene

PathCards logo

SuperPathways for NPM1P40 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NPM1P40 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NPM1P40 Gene

Drugs & Compounds for NPM1P40 Gene

No Compound Related Data Available

Transcripts for NPM1P40 Gene

mRNA/cDNA for NPM1P40 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NPM1P40 Gene

No ASD Table

Relevant External Links for NPM1P40 Gene

GeneLoc Exon Structure for
NPM1P40
ECgene alternative splicing isoforms for
NPM1P40

Expression for NPM1P40 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NPM1P40 Gene

NURSA nuclear receptor signaling pathways regulating expression of NPM1P40 Gene:

NPM1P40
genes like me logo Genes that share expression patterns with NPM1P40: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NPM1P40 Gene

Orthologs for NPM1P40 Gene

Evolution for NPM1P40 Gene

ENSEMBL:
Gene Tree for NPM1P40 (if available)
TreeFam:
Gene Tree for NPM1P40 (if available)

No data available for Orthologs for NPM1P40 Gene

Paralogs for NPM1P40 Gene

No data available for Paralogs for NPM1P40 Gene

Variants for NPM1P40 Gene

Additional Variant Information for NPM1P40 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NPM1P40

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NPM1P40 Gene

Disorders for NPM1P40 Gene

No disorders were found for NPM1P40 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NPM1P40 Gene

Publications for NPM1P40 Gene

No publications were found for NPM1P40 Gene.

No data available for External Links for NPM1P40 Gene

Products for NPM1P40 Gene

Sources for NPM1P40 Gene