Free for academic non-profit institutions. Other users need a Commercial license

Aliases for NPM1P39 Gene

Aliases for NPM1P39 Gene

  • Nucleophosmin 1 Pseudogene 39 2 3 5
  • Nucleophosmin 1 (Nucleolar Phosphoprotein B23, Numatrin) Pseudogene 39 2 3
  • Nucleophosmin (Nucleolar Phosphoprotein B23, Numatrin) Pseudogene 3

External Ids for NPM1P39 Gene

Previous GeneCards Identifiers for NPM1P39 Gene

  • GC01P027536

Summaries for NPM1P39 Gene

GeneCards Summary for NPM1P39 Gene

NPM1P39 (Nucleophosmin 1 Pseudogene 39) is a Pseudogene.

Additional gene information for NPM1P39 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPM1P39 Gene

Genomics for NPM1P39 Gene

GeneHancer (GH) Regulatory Elements for NPM1P39 Gene

Promoters and enhancers for NPM1P39 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J027206 Enhancer 0.3 Ensembl 600.7 0.0 -34 0.8 ZNF513 NPM1P39 CHCHD3P3
GH01J027487 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 53.2 +283.6 283561 6.4 ZNF473 CC2D1A SP1 ZFX SIX5 NKRF POLR2A MLLT1 ZNF121 CEBPG WASF2 ARID1A ACTG1P20 GPN2 FAM76A PHACTR4 NPM1P39 MAP3K6 PPP1R8 ENSG00000231344
GH01J028171 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 31 +967.5 967475 6.2 CC2D1A SP1 CBFA2T2 ZNF148 NKRF MLLT1 ZNF121 CEBPG ZNF687 ZSCAN21 PTAFR EYA3 SNHG12 GMEB1 TRNAU1AP ACTG1P20 YTHDF2 PHACTR4 NPM1P39 SNORA73B
GH01J026274 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 29.5 -922.9 -922941 19.1 ZNF473 SP1 ZFX CC2D1A ELF3 CTCF ZKSCAN8 CBFA2T2 ZNF148 NKRF SH3BGRL3 HMGN2 ARID1A ENSG00000225891 CD52 GPN2 NPM1P39 UBXN11 CEP85 LIN28A
GH01J027516 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 30.9 +317.0 316978 13.7 ZNF473 SP1 ZFX CC2D1A ZNF652 ELF3 CBFA2T2 ZNF148 NKRF MLLT1 LOC105376892 ENSG00000237429 ARID1A ACTG1P20 MAP3K6 PHACTR4 NPM1P39 EYA3 FAM76A WASF2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NPM1P39 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NPM1P39 Gene

Genomic Locations for NPM1P39 Gene
chr1:27,206,835-27,207,875
(GRCh38/hg38)
Size:
1,041 bases
Orientation:
Plus strand
chr1:27,533,421-27,534,287
(GRCh37/hg19)
Size:
867 bases
Orientation:
Plus strand

Genomic View for NPM1P39 Gene

Genes around NPM1P39 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NPM1P39 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NPM1P39 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPM1P39 Gene

Proteins for NPM1P39 Gene

Post-translational modifications for NPM1P39 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPM1P39 Gene

Domains & Families for NPM1P39 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NPM1P39 Gene

Function for NPM1P39 Gene

Phenotypes From GWAS Catalog for NPM1P39 Gene

Phenotypes for NPM1P39 Gene

genes like me logo Genes that share phenotypes with NPM1P39: view

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPM1P39 Gene

Localization for NPM1P39 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NPM1P39 Gene

Pathways & Interactions for NPM1P39 Gene

PathCards logo

SuperPathways for NPM1P39 Gene

No Data Available

Interacting Proteins for NPM1P39 Gene

Gene Ontology (GO) - Biological Process for NPM1P39 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NPM1P39 Gene

Drugs & Compounds for NPM1P39 Gene

No Compound Related Data Available

Transcripts for NPM1P39 Gene

mRNA/cDNA for NPM1P39 Gene

(2) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NPM1P39 Gene

No ASD Table

Relevant External Links for NPM1P39 Gene

GeneLoc Exon Structure for
NPM1P39
ECgene alternative splicing isoforms for
NPM1P39

Expression for NPM1P39 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NPM1P39 Gene

NURSA nuclear receptor signaling pathways regulating expression of NPM1P39 Gene:

NPM1P39
genes like me logo Genes that share expression patterns with NPM1P39: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NPM1P39 Gene

Orthologs for NPM1P39 Gene

Evolution for NPM1P39 Gene

ENSEMBL:
Gene Tree for NPM1P39 (if available)
TreeFam:
Gene Tree for NPM1P39 (if available)

No data available for Orthologs for NPM1P39 Gene

Paralogs for NPM1P39 Gene

No data available for Paralogs for NPM1P39 Gene

Variants for NPM1P39 Gene

Additional Variant Information for NPM1P39 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NPM1P39

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NPM1P39 Gene

Disorders for NPM1P39 Gene

No disorders were found for NPM1P39 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NPM1P39 Gene

Publications for NPM1P39 Gene

No publications were found for NPM1P39 Gene.

No data available for External Links for NPM1P39 Gene

Products for NPM1P39 Gene

Sources for NPM1P39 Gene

Content
Loading form....