Aliases for NPIPP1 Gene

Aliases for NPIPP1 Gene

  • Nuclear Pore Complex Interacting Protein Pseudogene 1 2 3 5
  • NPIPP1 5

External Ids for NPIPP1 Gene

Previous GeneCards Identifiers for NPIPP1 Gene

  • GC00U930285
  • GC16M015203
  • GC16M015204
  • GC16M015205
  • GC16M015206
  • GC16M015208

Summaries for NPIPP1 Gene

GeneCards Summary for NPIPP1 Gene

NPIPP1 (Nuclear Pore Complex Interacting Protein Pseudogene 1) is a Pseudogene.

Additional gene information for NPIPP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NPIPP1 Gene

Genomics for NPIPP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NPIPP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J015122 Enhancer 0.2 Ensembl 600.7 +0.5 497 0.4 NPIPP1 NTAN1 PKD1P6-NPIPP1 piR-53957-004 RRN3 PDXDC1 NPIPA5
GH16J014283 Promoter/Enhancer 1.4 ENCODE CraniofacialAtlas 55.2 +838.1 838135 3.6 ZNF221 SP1 CREB1 GATAD2A CTCF TEAD4 PRDM10 ZNF629 TFE3 SOX13 TRT-CGT2-1 PKD1P3 NPIPA3 NPIPP1 NPIPA1 LOC100505915 NPIPA2 PARN PKD1P6 BFAR
GH16J014337 Enhancer 1.3 Ensembl ENCODE dbSUPER 32.8 +785.6 785628 0.9 HNRNPL YBX1 SOX13 NFRKB RCOR2 TARDBP ZNF300 ZNF776 RBFOX2 RXRB PKD1P3 NPIPA2 LOC100505915 NPIPA3 PARN NPIPA1 NPIPP1 ERCC4 ENSG00000261819 PKD1P6
GH16J014973 Promoter/Enhancer 2.4 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11.2 +148.1 148097 4 SP1 CREB1 ATF7 PRDM10 ZNF629 SIX5 LEF1 IKZF1 NFKBIZ ZNF692 PDXDC1 HSALNG0109779 PKD1P3 LOC100505915 NPIPA2 NPIPA5 NPIPA3 PARN RRN3 NPIPA1
GH16J015638 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 -519.5 -519489 9 HNRNPL CREB1 GATAD2A CTCF TEAD4 PRDM10 REST ZNF629 LEF1 SOX13 MARF1 NDE1 MIR484 ENSG00000263335 PDXDC1 PKD1P3 PKD1P1 LOC100505915 PKD1P6 ABCC1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NPIPP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NPIPP1 Gene

Genomic Locations for NPIPP1 Gene
chr16:15,104,312-15,123,498
(GRCh38/hg38)
Size:
19,187 bases
Orientation:
Minus strand
chr16:15,198,178-15,225,458
(GRCh37/hg19)
Size:
27,281 bases
Orientation:
Minus strand

Genomic View for NPIPP1 Gene

Genes around NPIPP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NPIPP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NPIPP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPIPP1 Gene

Proteins for NPIPP1 Gene

Post-translational modifications for NPIPP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPIPP1 Gene

Domains & Families for NPIPP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NPIPP1 Gene

Function for NPIPP1 Gene

Phenotypes From GWAS Catalog for NPIPP1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPIPP1 Gene

Localization for NPIPP1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NPIPP1 Gene

Pathways & Interactions for NPIPP1 Gene

PathCards logo

SuperPathways for NPIPP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NPIPP1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NPIPP1 Gene

Drugs & Compounds for NPIPP1 Gene

No Compound Related Data Available

Transcripts for NPIPP1 Gene

mRNA/cDNA for NPIPP1 Gene

3 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for NPIPP1 Gene

No ASD Table

Relevant External Links for NPIPP1 Gene

GeneLoc Exon Structure for
NPIPP1

Expression for NPIPP1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NPIPP1 Gene

mRNA differential expression in normal tissues according to GTEx for NPIPP1 Gene

This gene is overexpressed in Brain - Cerebellum (x6.1) and Brain - Cerebellar Hemisphere (x5.5).
genes like me logo Genes that share expression patterns with NPIPP1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NPIPP1 Gene

Orthologs for NPIPP1 Gene

Evolution for NPIPP1 Gene

ENSEMBL:
Gene Tree for NPIPP1 (if available)
TreeFam:
Gene Tree for NPIPP1 (if available)

No data available for Orthologs for NPIPP1 Gene

Paralogs for NPIPP1 Gene

No data available for Paralogs for NPIPP1 Gene

Variants for NPIPP1 Gene

Additional Variant Information for NPIPP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NPIPP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NPIPP1 Gene

Disorders for NPIPP1 Gene

No disorders were found for NPIPP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NPIPP1 Gene

Publications for NPIPP1 Gene

No publications were found for NPIPP1 Gene.

Products for NPIPP1 Gene

Sources for NPIPP1 Gene