Aliases for NPIPB9 Gene

Aliases for NPIPB9 Gene

  • Nuclear Pore Complex Interacting Protein Family Member B9 2 3 5
  • Nuclear Pore Complex-Interacting Protein Family Member B9 3 3 4
  • Nuclear Pore Complex Interacting Protein Family, Member B9 2

External Ids for NPIPB9 Gene

Previous GeneCards Identifiers for NPIPB9 Gene

  • GC16P028782
  • GC16P028783
  • GC16P028752

Summaries for NPIPB9 Gene

GeneCards Summary for NPIPB9 Gene

NPIPB9 (Nuclear Pore Complex Interacting Protein Family Member B9) is a Protein Coding gene. An important paralog of this gene is NPIPB7.

Additional gene information for NPIPB9 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NPIPB9 Gene

Genomics for NPIPB9 Gene

GeneHancer (GH) Regulatory Elements for NPIPB9 Gene

Promoters and enhancers for NPIPB9 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16J028751 Promoter 0.3 EPDnew 500.4 +9.1 9113 0.1 PAWRP2 lnc-TUFM-6 piR-41163-007 NPIPB9 LOC105379464 piR-52689-006
GH16J028759 Promoter 0.3 EPDnew 500.4 +16.8 16803 0.1 piR-51671-033 NPIPB9 piR-39678-006 LOC105379464
GH16J028744 Enhancer 0.2 Ensembl 500.7 +1.6 1573 0.2 NPIPB9 piR-53208-002 piR-57297-002
GH16J028210 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 20.4 -531.4 -531446 4.2 FOXK2 HNRNPK ZBTB40 ZNF217 EP300 ZSCAN5C SIN3A NRF1 MYC POLR2G XPO6 piR-35674-184 SH2B1 ENSG00000261766 ENSG00000240634 NPIPB9 SPNS1 ENSG00000260853 RRN3P2 RNY1P10
GH16J029258 Promoter/Enhancer 1.7 FANTOM5 Ensembl ENCODE dbSUPER 18.7 +521.9 521899 11.3 ZNF217 POLR2G NONO ZIC2 REST RFX1 TOE1 CTBP1 SMARCC2 SKI ENSG00000260953 NPIPB9 NPIPB10P NPIPB8 ATXN2L ENSG00000240634 ENSG00000261766 SH2B1 TAOK2 NPIPB7
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NPIPB9 on UCSC Golden Path with GeneCards custom track

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for NPIPB9

Genomic Locations for NPIPB9 Gene

Genomic Locations for NPIPB9 Gene
chr16:28,742,728-28,772,850
(GRCh38/hg38)
Size:
30,123 bases
Orientation:
Plus strand
chr16:28,761,770-28,784,128
(GRCh37/hg19)
Size:
22,359 bases
Orientation:
Plus strand

Genomic View for NPIPB9 Gene

Genes around NPIPB9 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NPIPB9 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NPIPB9 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPIPB9 Gene

Proteins for NPIPB9 Gene

  • Protein details for NPIPB9 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    F8W1W9-NPIB9_HUMAN
    Recommended name:
    Nuclear pore complex-interacting protein family member B9
    Protein Accession:
    F8W1W9

    Protein attributes for NPIPB9 Gene

    Size:
    429 amino acids
    Molecular mass:
    49181 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NPIPB9 Gene

Post-translational modifications for NPIPB9 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPIPB9 Gene

Domains & Families for NPIPB9 Gene

Gene Families for NPIPB9 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins

Protein Domains for NPIPB9 Gene

InterPro:
ProtoNet:

Graphical View of Domain Structure for InterPro Entry

F8W1W9

UniProtKB/Swiss-Prot:

NPIB9_HUMAN :
  • Belongs to the NPIP family.
Family:
  • Belongs to the NPIP family.
genes like me logo Genes that share domains with NPIPB9: view

No data available for Suggested Antigen Peptide Sequences for NPIPB9 Gene

Function for NPIPB9 Gene

Phenotypes From GWAS Catalog for NPIPB9 Gene

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for NPIPB9

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPIPB9 Gene

Localization for NPIPB9 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NPIPB9 gene
Compartment Confidence
nucleus 4
extracellular 1
endoplasmic reticulum 1
plasma membrane 0
cytosol 0
golgi apparatus 0

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for NPIPB9 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm IDA --
genes like me logo Genes that share ontologies with NPIPB9: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot for NPIPB9 Gene

Pathways & Interactions for NPIPB9 Gene

PathCards logo

SuperPathways for NPIPB9 Gene

No Data Available

Interacting Proteins for NPIPB9 Gene

;

Gene Ontology (GO) - Biological Process for NPIPB9 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NPIPB9 Gene

Drugs & Compounds for NPIPB9 Gene

No Compound Related Data Available

Transcripts for NPIPB9 Gene

mRNA/cDNA for NPIPB9 Gene

2 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for NPIPB9

Alternative Splicing Database (ASD) splice patterns (SP) for NPIPB9 Gene

No ASD Table

Relevant External Links for NPIPB9 Gene

GeneLoc Exon Structure for
NPIPB9

Expression for NPIPB9 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NPIPB9 Gene

mRNA differential expression in normal tissues according to GTEx for NPIPB9 Gene

This gene is overexpressed in Testis (x6.5).

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NPIPB9

genes like me logo Genes that share expression patterns with NPIPB9: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NPIPB9 Gene

Orthologs for NPIPB9 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for NPIPB9 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 31
  • 92 (a)
ManyToMany
-- 31
  • 91 (a)
ManyToMany
-- 31
  • 89 (a)
ManyToMany
-- 31
  • 87 (a)
ManyToMany
-- 31
  • 71 (a)
ManyToMany
Species where no ortholog for NPIPB9 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NPIPB9 Gene

ENSEMBL:
Gene Tree for NPIPB9 (if available)
TreeFam:
Gene Tree for NPIPB9 (if available)

Paralogs for NPIPB9 Gene

(20) SIMAP similar genes for NPIPB9 Gene using alignment to 3 proteins:

  • NPIB9_HUMAN
  • F8VUA1_HUMAN
  • I3L0I5_HUMAN

Pseudogenes.org Pseudogenes for NPIPB9 Gene

genes like me logo Genes that share paralogs with NPIPB9: view

Variants for NPIPB9 Gene

Additional dbSNP identifiers (rs#s) for NPIPB9 Gene

Structural Variations from Database of Genomic Variants (DGV) for NPIPB9 Gene

Variant ID Type Subtype PubMed ID
dgv13n14 CNV gain 18776910
dgv2830n100 CNV gain 25217958
dgv813e212 CNV loss 25503493
esv2758640 CNV gain+loss 17122850
esv3368363 CNV duplication 20981092
nsv1059555 CNV gain 25217958
nsv1064483 CNV loss 25217958
nsv1066415 CNV gain 25217958
nsv1776 CNV deletion 18451855
nsv974890 CNV duplication 23825009
nsv978052 CNV duplication 23825009
nsv978210 CNV duplication 23825009
nsv984301 CNV duplication 23825009

Variation tolerance for NPIPB9 Gene

Gene Damage Index Score: 0.45; 9.94% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for NPIPB9 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NPIPB9

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for NPIPB9 Gene

Disorders for NPIPB9 Gene

Additional Disease Information for NPIPB9

No disorders were found for NPIPB9 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NPIPB9 Gene

Publications for NPIPB9 Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 3 4 54
  2. Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for NPIPB9 Gene

Sources for NPIPB9 Gene