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Aliases for NPIPB13 Gene
Aliases for NPIPB13 Gene
External Ids for NPIPB13 Gene
- HGNC: 41989
- Entrez Gene: 613037
- Ensembl: ENSG00000198064
- UniProtKB: A6NJU9
Summaries for NPIPB13 Gene
GeneCards Summary for NPIPB13 Gene
NPIPB13 (Nuclear Pore Complex Interacting Protein Family, Member B13) is a Protein Coding gene. An important paralog of this gene is NPIPB4.
Additional gene information for NPIPB13 Gene
- HGNC(41989)
- Entrez Gene(613037)
- Ensembl(ENSG00000198064)
- UniProtKB(A6NJU9)
- Open Targets Platform(ENSG00000198064)
- Search for NPIPB13 at DataMed
- Search for NPIPB13 at HumanCyc
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NPIPB13 Gene
Genomics for NPIPB13 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for NPIPB13 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around NPIPB13 on the GeneHancer Hub at the UCSC Golden Path
Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for NPIPB13
Genomic Locations for NPIPB13 Gene
Genomic Locations for NPIPB13 Gene
- chr16:30,222,735-30,254,510
- (GRCh38/hg38)
- Size:
- 31,776 bases
- Orientation:
- Minus strand
- chr16:30,234,350-30,256,932
- (GRCh37/hg19)
- Size:
- 22,583 bases
- Orientation:
- Minus strand
Genomic View for NPIPB13 Gene
Genes around NPIPB13 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 16p11.2 by HGNC
- 16p11.2 by Entrez Gene
- 16p11.2 by Ensembl
NPIPB13 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for NPIPB13 Gene
Proteins for NPIPB13 Gene
-
Protein details for NPIPB13 Gene (UniProtKB/Swiss-Prot)
- Protein Symbol:
- A6NJU9-NPB13_HUMAN
- Recommended name:
- Nuclear pore complex-interacting protein family member B13
- Protein Accession:
- A6NJU9
Protein attributes for NPIPB13 Gene
- Size:
- 1138 amino acids
- Molecular mass:
- 125964 Da
- Quaternary structure:
- No Data Available
Post-translational modifications for NPIPB13 Gene
No Post-translational modifications
Other Protein References for NPIPB13 Gene
- ENSEMBL proteins:
- REFSEQ proteins:
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for NPIPB13
- Origene Custom Protein Services for NPIPB13
No data available for DME Specific Peptides for NPIPB13 Gene
Domains & Families for NPIPB13 Gene
Gene Families for NPIPB13 Gene
- Human Protein Atlas (HPA):
-
- Predicted intracellular proteins
- Predicted membrane proteins
Graphical View of Domain Structure for InterPro Entry
A6NJU9- Family:
-
- Belongs to the NPIP family.
No data available for Suggested Antigen Peptide Sequences for NPIPB13 Gene
Function for NPIPB13 Gene
Phenotypes From GWAS Catalog for NPIPB13 Gene
Phenotypes for NPIPB13 Gene
- GenomeRNAi human phenotypes for NPIPB13:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPIPB13 Gene
Localization for NPIPB13 Gene
Subcellular locations from UniProtKB/Swiss-Prot for NPIPB13 Gene
- Membrane. Single-pass membrane protein.
| Compartment | Confidence |
|---|---|
| nucleus | 4 |
| plasma membrane | 1 |
| extracellular | 1 |
| mitochondrion | 0 |
| endoplasmic reticulum | 0 |
| golgi apparatus | 0 |
- Nucleoplasm (2)
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005654 | nucleoplasm | IDA | -- |
| GO:0016020 | membrane | IEA | -- |
| GO:0016021 | integral component of membrane | IEA | -- |
Pathways & Interactions for NPIPB13 Gene
Interacting Proteins for NPIPB13 Gene
No data available for Pathways by source and SIGNOR curated interactions for NPIPB13 Gene
Transcripts for NPIPB13 Gene
mRNA/cDNA for NPIPB13 Gene
- 1 REFSEQ mRNAs :
- 3 NCBI additional mRNA sequence :
- 7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000520915 3584 nts (view in UCSC)
- ENST00000543463 1342 nts (view in UCSC)
- ENST00000562937 797 nts (view in UCSC)
- ENST00000564219 519 nts (view in UCSC)
- ENST00000564502 543 nts (view in UCSC)
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for NPIPB13 Gene
- GeneLoc Exon Structure for
- NPIPB13
Expression for NPIPB13 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NPIPB13
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NPIPB13 Gene
Orthologs for NPIPB13 Gene
This gene was present in the common ancestor of human and chimp.
| Organism | Taxonomy | Gene | Similarity | Type | Details |
|---|---|---|---|---|---|
| Chimpanzee (Pan troglodytes) |
Mammalia | -- 31 |
|
ManyToMany | |
| -- 31 |
|
ManyToMany |
- Species where no ortholog for NPIPB13 was found in the sources mined by GeneCards:
-
- A. gosspyii yeast (Eremothecium gossypii)
- Actinobacteria (Mycobacterium tuberculosis)
- African clawed frog (Xenopus laevis)
- African malaria mosquito (Anopheles gambiae)
- Alicante grape (Vitis vinifera)
- Alpha proteobacteria (Wolbachia pipientis)
- Amoeba (Dictyostelium discoideum)
- Archea (Pyrococcus horikoshii)
- Baker's yeast (Saccharomyces cerevisiae)
- Barley (Hordeum vulgare)
- Beta proteobacteria (Neisseria meningitidis)
- Bread mold (Neurospora crassa)
- Chicken (Gallus gallus)
- Chromalveolata (Phytophthora infestans)
- Common water flea (Daphnia pulex)
- Corn (Zea mays)
- Cow (Bos Taurus)
- Dog (Canis familiaris)
- E. coli (Escherichia coli)
- Filamentous fungi (Aspergillus nidulans)
- Firmicute Bacteria (Streptococcus pneumoniae)
- Fission Yeast (Schizosaccharomyces pombe)
- Fruit Fly (Drosophila melanogaster)
- Green Algae (Chlamydomonas reinhardtii)
- Honey Bee (Apis mellifera)
- K. Lactis Yeast (Kluyveromyces lactis)
- Lizard (Anolis carolinensis)
- Loblloly Pine (Pinus taeda)
- Malaria Parasite (Plasmodium falciparum)
- Medicago Trunc (Medicago Truncatula)
- Moss (Physcomitrella patens)
- Mouse (Mus musculus)
- Oppossum (Monodelphis domestica)
- Orangutan (Pongo pygmaeus)
- Pig (Sus scrofa)
- Platypus (Ornithorhynchus anatinus)
- Rainbow Trout (Oncorhynchus mykiss)
- Rat (Rattus norvegicus)
- Rice (Oryza sativa)
- Rice Blast Fungus (Magnaporthe grisea)
- Schistosome Parasite (Schistosoma mansoni)
- Sea Anemone (Nematostella vectensis)
- Sea Vase (Ciona intestinalis)
- Sea Squirt (Ciona savignyi)
- Sea Urchin (Strongylocentrotus purpuratus)
- Sorghum (Sorghum bicolor)
- Soybean (Glycine max)
- Stem Rust Fungus (Puccinia graminis)
- Sugarcane (Saccharum officinarum)
- Thale Cress (Arabidopsis thaliana)
- Tomato (Lycopersicon esculentum)
- Toxoplasmosis (Toxoplasma gondii)
- Trichoplax (Trichoplax adhaerens)
- Tropical Clawed Frog (Silurana tropicalis)
- Wheat (Triticum aestivum)
- Worm (Caenorhabditis elegans)
- Zebrafish (Danio rerio)
Paralogs for NPIPB13 Gene
Variants for NPIPB13 Gene
| Variant ID | Type | Subtype | PubMed ID |
|---|---|---|---|
| dgv1516e59 | CNV | duplication | 20981092 |
| esv22245 | CNV | gain | 19812545 |
| esv2758642 | CNV | gain | 17122850 |
| esv3350426 | CNV | duplication | 20981092 |
| esv3370002 | CNV | duplication | 20981092 |
| esv3446505 | CNV | duplication | 20981092 |
| esv3451115 | CNV | duplication | 20981092 |
| nsv1078393 | CNV | duplication | 25765185 |
| nsv1110274 | CNV | duplication | 24896259 |
| nsv1141284 | CNV | duplication | 24896259 |
| nsv1148121 | CNV | duplication | 26484159 |
| nsv9432 | CNV | gain | 18304495 |
| nsv977956 | CNV | duplication | 23825009 |
| nsv978061 | CNV | duplication | 23825009 |
| nsv978218 | CNV | duplication | 23825009 |
| nsv978220 | CNV | duplication | 23825009 |
Additional Variant Information for NPIPB13 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- NPIPB13
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for NPIPB13 Gene
Disorders for NPIPB13 Gene
Additional Disease Information for NPIPB13
No disorders were found for NPIPB13 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NPIPB13 Gene
Publications for NPIPB13 Gene
- A human interactome in three quantitative dimensions organized by stoichiometries and abundances. (PMID: 26496610) Hein MY … Mann M (Cell 2015) 3
- Phylogenetic-based propagation of functional annotations within the Gene Ontology consortium. (PMID: 21873635) Gaudet P … Thomas PD (Briefings in bioinformatics 2011) 3
- A genome-scale protein interaction profile of Drosophila p53 uncovers additional nodes of the human p53 network. (PMID: 20308539) Lunardi A … Collavin L (Proceedings of the National Academy of Sciences of the United States of America 2010) 3
- Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3
- The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 4
ExternalLinks
Products for NPIPB13 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for NPIPB13
- Origene Custom Protein Services for NPIPB13
- Browse OriGene Inhibitory RNA Products For NPIPB13
- Browse OriGene qPCR primer pairs and template standards
- OriGene CRISPR knockouts for NPIPB13
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For NPIPB13
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- VectorBuilder Custom and pre-made DNA vectors for NPIPB13 (ie. gene expression, shRNA knockdown, CRISPR)
- VectorBuilder Viral vectors for NPIPB13 (ie. lentivirus, AAV, adenovirus)
- VectorBuilder CRISPR vectors for NPIPB13 (ie. knockout, knockin, CRISPRa, CRISPRi)
- VectorBuilder Virus packaging for NPIPB13 CRISPR vectors (ie. lentivirus, AAV, adenovirus)
- VectorBuilder Stable cell line generation for NPIPB13
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for NPIPB13
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for NPIPB13
- Search GeneCopoeia for miRNA 3'UTR Target clone products for NPIPB13
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for NPIPB13
Sources for NPIPB13 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB