Aliases for NPIPB12 Gene

Aliases for NPIPB12 Gene

  • Nuclear Pore Complex Interacting Protein Family Member B12 2 3 5
  • Nuclear Pore Complex Interacting Protein Family, Member B12 3
  • Nuclear Pore Complex-Interacting Protein Family Member B12 13
  • Nuclear Pore Complex-Interacting Protein Family Member B13 13
  • Nuclear Pore Complex-Interacting Protein Family Member B4 13
  • Nuclear Pore Complex-Interacting Protein Family Member B5 13
  • NPIPB12 5
  • NPIPB13 13
  • NPIPB4 13

External Ids for NPIPB12 Gene

Summaries for NPIPB12 Gene

GeneCards Summary for NPIPB12 Gene

NPIPB12 (Nuclear Pore Complex Interacting Protein Family Member B12) is a Protein Coding gene. An important paralog of this gene is NPIPB13.

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NPIPB12 Gene

Genomics for NPIPB12 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NPIPB12 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NPIPB12 on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for NPIPB12

Genomic Locations for NPIPB12 Gene

Genomic Locations for NPIPB12 Gene
chr16:29,483,534-29,505,999
(GRCh38/hg38)
Size:
22,466 bases
Orientation:
Minus strand
chr16:29,495,010-29,517,320
(GRCh37/hg19)
Size:
22,311 bases
Orientation:
Minus strand

Genomic View for NPIPB12 Gene

Genes around NPIPB12 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NPIPB12 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NPIPB12 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPIPB12 Gene

Proteins for NPIPB12 Gene

  • Protein details for NPIPB12 Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    E5RHP9-E5RHP9_HUMAN
    Recommended name:
    Nuclear pore complex-interacting protein family member B12
    Protein Accession:
    E5RHP9
    Secondary Accessions:
    • E7EQ51

    Protein attributes for NPIPB12 Gene

    Size:
    49 amino acids
    Molecular mass:
    5676 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NPIPB12 Gene

Post-translational modifications for NPIPB12 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPIPB12 Gene

Domains & Families for NPIPB12 Gene

Gene Families for NPIPB12 Gene

Human Protein Atlas (HPA):
  • Predicted intracellular proteins
  • Predicted membrane proteins

Protein Domains for NPIPB12 Gene

InterPro:
ProtoNet:
genes like me logo Genes that share domains with NPIPB12: view

No data available for Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NPIPB12 Gene

Function for NPIPB12 Gene

Phenotypes From GWAS Catalog for NPIPB12 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPIPB12 Gene

Localization for NPIPB12 Gene

Subcellular locations from the

Human Protein Atlas (HPA)

Gene Ontology (GO) - Cellular Components for NPIPB12 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005654 nucleoplasm IDA --
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with NPIPB12: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot and Subcellular locations from COMPARTMENTS for NPIPB12 Gene

Pathways & Interactions for NPIPB12 Gene

PathCards logo

SuperPathways for NPIPB12 Gene

No Data Available

Interacting Proteins for NPIPB12 Gene

Gene Ontology (GO) - Biological Process for NPIPB12 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NPIPB12 Gene

Drugs & Compounds for NPIPB12 Gene

No Compound Related Data Available

Transcripts for NPIPB12 Gene

mRNA/cDNA for NPIPB12 Gene

1 REFSEQ mRNAs :
9 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NPIPB12 Gene

No ASD Table

Relevant External Links for NPIPB12 Gene

GeneLoc Exon Structure for
NPIPB12

Expression for NPIPB12 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NPIPB12

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NPIPB12 Gene

Orthologs for NPIPB12 Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for NPIPB12 Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
Mammalia -- 31
  • 43 (a)
ManyToMany
-- 31
  • 37 (a)
ManyToMany
Species where no ortholog for NPIPB12 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • Cow (Bos Taurus)
  • Dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Lizard (Anolis carolinensis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Mouse (Mus musculus)
  • Oppossum (Monodelphis domestica)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rat (Rattus norvegicus)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Tropical Clawed Frog (Silurana tropicalis)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)
  • Zebrafish (Danio rerio)

Evolution for NPIPB12 Gene

ENSEMBL:
Gene Tree for NPIPB12 (if available)
TreeFam:
Gene Tree for NPIPB12 (if available)

Paralogs for NPIPB12 Gene

genes like me logo Genes that share paralogs with NPIPB12: view

Variants for NPIPB12 Gene

Additional dbSNP identifiers (rs#s) for NPIPB12 Gene

Additional Variant Information for NPIPB12 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NPIPB12

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NPIPB12 Gene

Disorders for NPIPB12 Gene

No disorders were found for NPIPB12 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NPIPB12 Gene

Publications for NPIPB12 Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 13
  2. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3

No data available for Mastermind for NPIPB12 Gene

Products for NPIPB12 Gene

Sources for NPIPB12 Gene