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Aliases for NPIPB10P Gene

Aliases for NPIPB10P Gene

  • Nuclear Pore Complex Interacting Protein Family, Member B10, Pseudogene 2 3 5
  • Nuclear Pore Complex Interacting Protein Family Member A1 Pseudogene 3
  • Nuclear Pore Complex Interacting Protein Pseudogene 3
  • NPIP 3

External Ids for NPIPB10P Gene

Summaries for NPIPB10P Gene

GeneCards Summary for NPIPB10P Gene

NPIPB10P (Nuclear Pore Complex Interacting Protein Family, Member B10, Pseudogene) is a Pseudogene.

Additional gene information for NPIPB10P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPIPB10P Gene

Genomics for NPIPB10P Gene

GeneHancer (GH) Regulatory Elements for NPIPB10P Gene

Promoters and enhancers for NPIPB10P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH16I028844 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 24.9 -191.6 -191631 3 DMAP1 IRF4 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 SP3 NFYC TUFM SH2B1 ATXN2L NFATC2IP SPNS1 ENSG00000260853 SMG1P2 NPIPB10P ENSG00000260367 NPIPB12
GH16I028861 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 19.3 -173.2 -173214 5.6 CLOCK ZFP64 DMAP1 YY1 ZNF213 E2F8 ZNF143 SP3 NFYC PPARGC1A SH2B1 ENSG00000261766 TUFM ATXN2L NPIPB12 NFATC2IP ENSG00000260853 SULT1A2 NPIPB10P ENSG00000198106
GH16I029972 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE 16.4 +937.7 937723 6.1 HDGF PKNOX1 MLX ARNT ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 TAOK2 SETD1A INO80E NPIPB12 SRCAP NPIPB13 ENSG00000260367 ZNF764 ZNF785 BCL7C
GH16I029992 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 16.4 +957.1 957090 4.8 CLOCK MLX ZFP64 DMAP1 YY1 SLC30A9 ZNF213 E2F8 ZNF143 ZNF548 INO80E GC16M029996 HIRIP3 PIR37996 PIR46335 SRCAP SMG1P5 SETD1A SMG1P2 ENSG00000198106
GH16I029898 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 16.4 +862.7 862714 3.8 PKNOX1 ARNT MLX ZFP64 ARID4B SIN3A YBX1 FEZF1 DMAP1 ZNF2 ASPHD1 GC16M029899 GC16M029900 SEZ6L2 ZNF785 ENSG00000260114 SMG1P5 SMG1P2 SRCAP MIR762HG
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NPIPB10P on UCSC Golden Path with GeneCards custom track

Genomic Locations for NPIPB10P Gene

Genomic Locations for NPIPB10P Gene
chr16:29,037,834-29,052,726
(GRCh38/hg38)
Size:
14,893 bases
Orientation:
Plus strand
chr16:29,049,155-29,064,047
(GRCh37/hg19)

Genomic View for NPIPB10P Gene

Genes around NPIPB10P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NPIPB10P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NPIPB10P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPIPB10P Gene

Proteins for NPIPB10P Gene

Post-translational modifications for NPIPB10P Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPIPB10P Gene

Domains & Families for NPIPB10P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NPIPB10P Gene

Function for NPIPB10P Gene

Phenotypes From GWAS Catalog for NPIPB10P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPIPB10P Gene

Localization for NPIPB10P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NPIPB10P Gene

Pathways & Interactions for NPIPB10P Gene

SuperPathways for NPIPB10P Gene

No Data Available

Interacting Proteins for NPIPB10P Gene

Gene Ontology (GO) - Biological Process for NPIPB10P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NPIPB10P Gene

Drugs & Compounds for NPIPB10P Gene

No Compound Related Data Available

Transcripts for NPIPB10P Gene

mRNA/cDNA for NPIPB10P Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NPIPB10P Gene

No ASD Table

Relevant External Links for NPIPB10P Gene

GeneLoc Exon Structure for
NPIPB10P
ECgene alternative splicing isoforms for
NPIPB10P

Expression for NPIPB10P Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NPIPB10P Gene

Orthologs for NPIPB10P Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for NPIPB10P Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 34
  • 92 (a)
ManyToMany
-- 34
  • 91 (a)
ManyToMany
-- 34
  • 89 (a)
ManyToMany
-- 34
  • 85 (a)
ManyToMany
-- 34
  • 71 (a)
ManyToMany
Species where no ortholog for NPIPB10P was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NPIPB10P Gene

ENSEMBL:
Gene Tree for NPIPB10P (if available)
TreeFam:
Gene Tree for NPIPB10P (if available)

Paralogs for NPIPB10P Gene

No data available for Paralogs for NPIPB10P Gene

Variants for NPIPB10P Gene

Additional Variant Information for NPIPB10P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NPIPB10P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NPIPB10P Gene

Disorders for NPIPB10P Gene

Additional Disease Information for NPIPB10P

No disorders were found for NPIPB10P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NPIPB10P Gene

Publications for NPIPB10P Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 3 58

Products for NPIPB10P Gene

Sources for NPIPB10P Gene

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