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Aliases for NPHP3-AS1 Gene

Subcategory (RNA class) for NPHP3-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for NPHP3-AS1 Gene

  • NPHP3 Antisense RNA 1 2 3 5
  • NPHP3 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Non-Protein Coding RNA 119 2
  • NCRNA00119 3

External Ids for NPHP3-AS1 Gene

Previous HGNC Symbols for NPHP3-AS1 Gene

  • NCRNA00119

Previous GeneCards Identifiers for NPHP3-AS1 Gene

  • GC03P132442

Summaries for NPHP3-AS1 Gene

GeneCards Summary for NPHP3-AS1 Gene

NPHP3-AS1 (NPHP3 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NPHP3-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPHP3-AS1 Gene

Genomics for NPHP3-AS1 Gene

GeneHancer (GH) Regulatory Elements for NPHP3-AS1 Gene

Promoters and enhancers for NPHP3-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I132721 Promoter/Enhancer 1.9 EPDnew Ensembl ENCODE 550.8 +0.8 792 3.1 HDGF ATF1 ARID4B SIN3A BRCA1 ZNF48 YY1 ETS1 ZNF121 GLIS2 NPHP3 NPHP3-ACAD11 NPHP3-AS1 LOC105374115
GH03I132726 Enhancer 0.6 ENCODE 0.8 +4.8 4762 0.2 CTCF ZNF654 TEAD1 TEAD4 TRIM22 TEAD2 RAD21 ZNF592 RFX5 TEAD3 NPHP3 NPHP3-ACAD11 NPHP3-AS1 LOC105374115
GH03I132731 Enhancer 0.5 ENCODE 0.4 +9.5 9542 0.1 CTCF ZNF654 SMC3 REST FEZF1 RAD21 BFSP2 TFP1 TOPBP1 NPHP3 NPHP3-ACAD11 NPHP3-AS1 LOC105374115
GH03I132787 Enhancer 0.8 Ensembl ENCODE 0.2 +66.4 66407 1.8 MEIS2 SOX6 MZF1 CEBPB CEBPG ATF2 ZBTB40 ATF4 ZNF766 ATF3 NPHP3 LOC105374115 NPHP3-ACAD11 NPHP3-AS1
GH03I132667 Enhancer 0.7 ENCODE 0.2 -53.4 -53439 1.7 TEAD4 TAL1 TCF12 NCOR1 CBFA2T2 CREM SMARCE1 MTA2 CBFA2T3 DACH1 NPHP3 ACAD11 UBA5 NPHP3-ACAD11 NPHP3-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NPHP3-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NPHP3-AS1 Gene

Genomic Locations for NPHP3-AS1 Gene
152,474 bases
Plus strand

Genomic View for NPHP3-AS1 Gene

Genes around NPHP3-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NPHP3-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NPHP3-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPHP3-AS1 Gene

Proteins for NPHP3-AS1 Gene

Post-translational modifications for NPHP3-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPHP3-AS1 Gene

Domains & Families for NPHP3-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NPHP3-AS1 Gene

Function for NPHP3-AS1 Gene

Phenotypes From GWAS Catalog for NPHP3-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPHP3-AS1 Gene

Localization for NPHP3-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NPHP3-AS1 Gene

Pathways & Interactions for NPHP3-AS1 Gene

SuperPathways for NPHP3-AS1 Gene

No Data Available

Interacting Proteins for NPHP3-AS1 Gene

Gene Ontology (GO) - Biological Process for NPHP3-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for NPHP3-AS1 Gene

Drugs & Compounds for NPHP3-AS1 Gene

No Compound Related Data Available

Transcripts for NPHP3-AS1 Gene

mRNA/cDNA for NPHP3-AS1 Gene

(4) Additional mRNA sequences :
(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Unigene Clusters for NPHP3-AS1 Gene

NPHP3 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NPHP3-AS1 Gene

No ASD Table

Relevant External Links for NPHP3-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for NPHP3-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NPHP3-AS1 Gene

SOURCE GeneReport for Unigene cluster for NPHP3-AS1 Gene:

genes like me logo Genes that share expression patterns with NPHP3-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NPHP3-AS1 Gene

Orthologs for NPHP3-AS1 Gene

Evolution for NPHP3-AS1 Gene

Gene Tree for NPHP3-AS1 (if available)
Gene Tree for NPHP3-AS1 (if available)

No data available for Orthologs for NPHP3-AS1 Gene

Paralogs for NPHP3-AS1 Gene

No data available for Paralogs for NPHP3-AS1 Gene

Variants for NPHP3-AS1 Gene

Sequence variations from dbSNP and Humsavar for NPHP3-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs13099099 benign, Renal-hepatic-pancreatic dysplasia, Meckel-Gruber syndrome, Nephronophthisis 132,722,424(+) T/C intron_variant
rs145643112 conflicting-interpretations-of-pathogenicity, benign, not specified, Nephronophthisis, not provided 132,722,202(+) C/T upstream_transcript_variant
rs146839563 likely-benign, Nephronophthisis 132,722,101(+) C/T upstream_transcript_variant
rs192633696 benign, conflicting-interpretations-of-pathogenicity, uncertain-significance, not specified, Nephronophthisis, Renal-hepatic-pancreatic dysplasia, Meckel-Gruber syndrome 132,722,299(+) C/A/G upstream_transcript_variant
rs200233813 uncertain-significance, Nephronophthisis, Renal-hepatic-pancreatic dysplasia, Meckel-Gruber syndrome 132,722,024(+) G/A/C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for NPHP3-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv938e214 CNV loss 21293372
esv25640 CNV loss 19812545
esv3304196 CNV mobile element insertion 20981092
esv3309169 CNV mobile element insertion 20981092
esv3360025 CNV insertion 20981092
esv3392181 CNV insertion 20981092
esv3597830 CNV gain 21293372
esv3893774 CNV loss 25118596
nsv1073681 CNV deletion 25765185
nsv1128874 CNV duplication 24896259
nsv1133563 CNV deletion 24896259
nsv998211 CNV loss 25217958
nsv591800 CNV gain 21841781
nsv591799 CNV gain 21841781
nsv591798 CNV loss 21841781
nsv517045 CNV loss 19592680
nsv473252 CNV novel sequence insertion 20440878
nsv460856 CNV gain 19166990
nsv1150162 CNV duplication 26484159
nsv1144051 CNV deletion 24896259

Additional Variant Information for NPHP3-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NPHP3-AS1 Gene

Disorders for NPHP3-AS1 Gene

Additional Disease Information for NPHP3-AS1

No disorders were found for NPHP3-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NPHP3-AS1 Gene

Publications for NPHP3-AS1 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 2 3 58

Products for NPHP3-AS1 Gene

Sources for NPHP3-AS1 Gene

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