Aliases for NPEPPSP1 Gene

Aliases for NPEPPSP1 Gene

  • NPEPPS Pseudogene 1 2 3 5
  • Aminopeptidase Puromycin Sensitive Pseudogene 3
  • NPEPPSP1 5

External Ids for NPEPPSP1 Gene

Previous GeneCards Identifiers for NPEPPSP1 Gene

  • GC17M038200

Summaries for NPEPPSP1 Gene

GeneCards Summary for NPEPPSP1 Gene

NPEPPSP1 (NPEPPS Pseudogene 1) is a Pseudogene.

Additional gene information for NPEPPSP1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NPEPPSP1 Gene

Genomics for NPEPPSP1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NPEPPSP1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J038255 Promoter/Enhancer 2 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 600.7 +0.8 848 4 ATF7 PRDM10 ZNF629 LARP7 ZNF143 PRDM1 ZIC2 PKNOX1 POLR2A PATZ1 NPEPPSP1 TBC1D3 MRPL45 piR-49732-241
GH17J038248 Enhancer 0.7 dbSUPER 0.4 +8.1 8137 0.9 ZNF300 ZNF600 CEBPA FOXK2 SCRT2 KLF7 BRF2 CEBPB OSR2 ZNF580 DDX52 piR-61029-057 NPEPPSP1 MN298114-092 MRPL45 TBC1D3
GH17J038231 Enhancer 0.9 Ensembl ENCODE 0.4 +24.7 24748 2.6 CREB1 ATF7 CEBPB CTBP1 FOS JUN RCOR1 PKNOX1 ZNF217 JUND ENSG00000274284 piR-57461-087 NPEPPSP1 TBC1D3 MRPL45
GH17J038221 Enhancer 0.7 Ensembl ENCODE 0.3 +36.0 36048 0.8 CEBPB RCOR1 JUND EP300 STAT3 THRAP3 HLF ZNF121 ENSG00000274284 TBC1D3 NPEPPSP1 MRPL45
GH17J038250 Enhancer 0.4 Ensembl 0.4 +5.9 5948 2.6 ZBTB33 KLF1 SREBF1 DDX52 TBC1D3 MRPL45 piR-61029-057 NPEPPSP1 MN298114-092
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NPEPPSP1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NPEPPSP1 Gene

Genomic Locations for NPEPPSP1 Gene
chr17:38,195,703-38,257,249
(GRCh38/hg38)
Size:
61,547 bases
Orientation:
Minus strand
chr17:36,351,796-36,413,256
(GRCh37/hg19)
Size:
61,461 bases
Orientation:
Minus strand

Genomic View for NPEPPSP1 Gene

Genes around NPEPPSP1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NPEPPSP1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NPEPPSP1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPEPPSP1 Gene

Proteins for NPEPPSP1 Gene

Post-translational modifications for NPEPPSP1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPEPPSP1 Gene

Domains & Families for NPEPPSP1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NPEPPSP1 Gene

Function for NPEPPSP1 Gene

Phenotypes From GWAS Catalog for NPEPPSP1 Gene

Gene Ontology (GO) - Molecular Function for NPEPPSP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0008270 zinc ion binding IBA 21873635
GO:0042277 peptide binding IBA 21873635
GO:0070006 metalloaminopeptidase activity IBA 21873635
genes like me logo Genes that share ontologies with NPEPPSP1: view

Phenotypes for NPEPPSP1 Gene

GenomeRNAi human phenotypes for NPEPPSP1:
genes like me logo Genes that share phenotypes with NPEPPSP1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPEPPSP1 Gene

Localization for NPEPPSP1 Gene

Gene Ontology (GO) - Cellular Components for NPEPPSP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005737 cytoplasm IBA 21873635
GO:0070062 extracellular exosome HDA 23533145
genes like me logo Genes that share ontologies with NPEPPSP1: view

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for NPEPPSP1 Gene

Pathways & Interactions for NPEPPSP1 Gene

PathCards logo

SuperPathways for NPEPPSP1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NPEPPSP1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0006508 proteolysis IBA 21873635
GO:0043171 peptide catabolic process IBA 21873635
genes like me logo Genes that share ontologies with NPEPPSP1: view

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NPEPPSP1 Gene

Drugs & Compounds for NPEPPSP1 Gene

No Compound Related Data Available

Transcripts for NPEPPSP1 Gene

mRNA/cDNA for NPEPPSP1 Gene

3 NCBI additional mRNA sequence :
2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NPEPPSP1 Gene

No ASD Table

Relevant External Links for NPEPPSP1 Gene

GeneLoc Exon Structure for
NPEPPSP1

Expression for NPEPPSP1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NPEPPSP1

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NPEPPSP1 Gene

Orthologs for NPEPPSP1 Gene

Evolution for NPEPPSP1 Gene

ENSEMBL:
Gene Tree for NPEPPSP1 (if available)
TreeFam:
Gene Tree for NPEPPSP1 (if available)

No data available for Orthologs for NPEPPSP1 Gene

Paralogs for NPEPPSP1 Gene

No data available for Paralogs for NPEPPSP1 Gene

Variants for NPEPPSP1 Gene

Structural Variations from Database of Genomic Variants (DGV) for NPEPPSP1 Gene

Variant ID Type Subtype PubMed ID
dgv1463n106 CNV duplication 24896259
dgv1755e59 CNV duplication 20981092
dgv5588n54 CNV loss 21841781
dgv911e212 CNV gain 25503493
dgv912e212 CNV loss 25503493
dgv913e212 CNV loss 25503493
dgv914e212 CNV gain 25503493
dgv915e212 CNV gain 25503493
dgv916e212 CNV loss 25503493
esv1001424 CNV gain 20482838
esv1010078 CNV loss 20482838
esv2668870 CNV deletion 23128226
esv2715896 CNV deletion 23290073
esv2758688 CNV gain+loss 17122850
esv28567 CNV gain+loss 19812545
esv3337208 CNV duplication 20981092
esv3349767 CNV insertion 20981092
esv3383710 CNV duplication 20981092
esv3388344 CNV duplication 20981092
esv3419373 CNV duplication 20981092
esv3428111 CNV duplication 20981092
esv3443010 CNV duplication 20981092
esv3572853 CNV gain 25503493
esv3573020 CNV gain 25503493
esv3582629 CNV loss 25503493
esv3640517 CNV loss 21293372
nsv1078415 CNV duplication 25765185
nsv1123126 CNV deletion 24896259
nsv1146669 OTHER inversion 26484159
nsv1153123 CNV duplication 26484159
nsv428341 CNV gain+loss 18775914
nsv471507 CNV gain 19718026
nsv574983 CNV loss 21841781
nsv574984 CNV gain 21841781
nsv574985 CNV loss 21841781
nsv574986 CNV loss 21841781
nsv820624 CNV duplication 20802225
nsv833435 CNV gain+loss 17160897
nsv953891 CNV duplication 24416366
nsv954581 CNV deletion 24416366
nsv960097 CNV duplication 23825009
nsv962318 CNV duplication 23825009
nsv978418 CNV duplication 23825009

Additional Variant Information for NPEPPSP1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NPEPPSP1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for NPEPPSP1 Gene

Disorders for NPEPPSP1 Gene

No disorders were found for NPEPPSP1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NPEPPSP1 Gene

Publications for NPEPPSP1 Gene

  1. PLEKHA4/kramer Attenuates Dishevelled Ubiquitination to Modulate Wnt and Planar Cell Polarity Signaling. (PMID: 31091453) Shami Shah A … Baskin JM (Cell reports 2019) 3
  2. Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. (PMID: 28611215) Fei T … Brown M (Proceedings of the National Academy of Sciences of the United States of America 2017) 3
  3. A Human Tyrosine Phosphatase Interactome Mapped by Proteomic Profiling. (PMID: 28675297) Kumar P … Maddika S (Journal of proteome research 2017) 3
  4. In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. (PMID: 23533145) Principe S … Drake RR (Proteomics 2013) 3
  5. A census of human soluble protein complexes. (PMID: 22939629) Havugimana PC … Emili A (Cell 2012) 3

No data available for Mastermind for NPEPPSP1 Gene

Products for NPEPPSP1 Gene

Sources for NPEPPSP1 Gene