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Aliases for NPEPPSP1 Gene
Aliases for NPEPPSP1 Gene
External Ids for NPEPPSP1 Gene
- HGNC: 44259
- Entrez Gene: 440434
- Ensembl: ENSG00000274487
Previous GeneCards Identifiers for NPEPPSP1 Gene
- GC17M038200
Summaries for NPEPPSP1 Gene
GeneCards Summary for NPEPPSP1 Gene
NPEPPSP1 (NPEPPS Pseudogene 1) is a Pseudogene.
Additional gene information for NPEPPSP1 Gene
No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NPEPPSP1 Gene
Genomics for NPEPPSP1 Gene
GeneHancer (GH) Regulatory Elements Pubs
Promoters and enhancers for NPEPPSP1 Gene
| GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
|---|---|---|---|---|---|---|---|---|---|---|
| GH17J038255 | Promoter/Enhancer | 2 | FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER | 600.7 | +0.8 | 848 | 4 | ATF7 PRDM10 ZNF629 LARP7 ZNF143 PRDM1 ZIC2 PKNOX1 POLR2A PATZ1 | NPEPPSP1 TBC1D3 MRPL45 piR-49732-241 | |
| GH17J038248 | Enhancer | 0.7 | dbSUPER | 0.4 | +8.1 | 8137 | 0.9 | ZNF300 ZNF600 CEBPA FOXK2 SCRT2 KLF7 BRF2 CEBPB OSR2 ZNF580 | DDX52 piR-61029-057 NPEPPSP1 MN298114-092 MRPL45 TBC1D3 | |
| GH17J038231 | Enhancer | 0.9 | Ensembl ENCODE | 0.4 | +24.7 | 24748 | 2.6 | CREB1 ATF7 CEBPB CTBP1 FOS JUN RCOR1 PKNOX1 ZNF217 JUND | ENSG00000274284 piR-57461-087 NPEPPSP1 TBC1D3 MRPL45 | |
| GH17J038221 | Enhancer | 0.7 | Ensembl ENCODE | 0.3 | +36.0 | 36048 | 0.8 | CEBPB RCOR1 JUND EP300 STAT3 THRAP3 HLF ZNF121 | ENSG00000274284 TBC1D3 NPEPPSP1 MRPL45 | |
| GH17J038250 | Enhancer | 0.4 | Ensembl | 0.4 | +5.9 | 5948 | 2.6 | ZBTB33 KLF1 SREBF1 | DDX52 TBC1D3 MRPL45 piR-61029-057 NPEPPSP1 MN298114-092 |
- Elite GeneHancer and/or Elite GeneHancer-gene association
Download GeneHancer data from 2017 publication |
Request up-to-date GeneHancer data (full dataset)
GeneHancers around NPEPPSP1 on the GeneHancer Hub at the UCSC Golden Path
Genomic Locations for NPEPPSP1 Gene
Genomic Locations for NPEPPSP1 Gene
- chr17:38,195,703-38,257,249
- (GRCh38/hg38)
- Size:
- 61,547 bases
- Orientation:
- Minus strand
- chr17:36,351,796-36,413,256
- (GRCh37/hg19)
- Size:
- 61,461 bases
- Orientation:
- Minus strand
Genomic View for NPEPPSP1 Gene
Genes around NPEPPSP1 on UCSC Golden Path with GeneCards custom track
- Cytogenetic band:
-
- 17q12 by HGNC
- 17q12 by Entrez Gene
- 17q12 by Ensembl
NPEPPSP1 Gene in genomic location: bands according to
Ensembl, locations according to GeneLoc
(and/or Entrez Gene and/or Ensembl if different)
Genomic Neighborhood
• Exon Structure
• Gene Density
RefSeq DNA sequence for NPEPPSP1 Gene
Proteins for NPEPPSP1 Gene
Post-translational modifications for NPEPPSP1 Gene
No Post-translational modifications
Antibody Products
Protein Products
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for NPEPPSP1
- Origene Custom Protein Services for NPEPPSP1
No data available for DME Specific Peptides for NPEPPSP1 Gene
Domains & Families for NPEPPSP1 Gene
No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NPEPPSP1 Gene
Function for NPEPPSP1 Gene
Phenotypes From GWAS Catalog for NPEPPSP1 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0008270 | zinc ion binding | IBA | 21873635 |
| GO:0042277 | peptide binding | IBA | 21873635 |
| GO:0070006 | metalloaminopeptidase activity | IBA | 21873635 |
Phenotypes for NPEPPSP1 Gene
- GenomeRNAi human phenotypes for NPEPPSP1:
Animal Model Products
- Taconic Biosciences: Generate A Custom CRISPR Mouse Model For Your Study
CRISPR Products
- Browse CRISPR knockouts for NPEPPSP1
miRNA Products
Inhibitory RNA Products
Clone Products
No data available for Molecular function , Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPEPPSP1 Gene
Localization for NPEPPSP1 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0005737 | cytoplasm | IBA | 21873635 |
| GO:0070062 | extracellular exosome | HDA | 23533145 |
No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS and Subcellular locations from the Human Protein Atlas (HPA) for NPEPPSP1 Gene
Pathways & Interactions for NPEPPSP1 Gene
| GO ID | Qualified GO term | Evidence | PubMed IDs |
|---|---|---|---|
| GO:0006508 | proteolysis | IBA | 21873635 |
| GO:0043171 | peptide catabolic process | IBA | 21873635 |
No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NPEPPSP1 Gene
Transcripts for NPEPPSP1 Gene
mRNA/cDNA for NPEPPSP1 Gene
- 3 NCBI additional mRNA sequence :
- 2 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
-
- ENST00000620148 1479 nts (view in UCSC)
- ENST00000649858 1643 nts (view in UCSC)
CRISPR Products
- Browse CRISPR knockouts for NPEPPSP1
miRNA Products
Inhibitory RNA Products
Clone Products
Relevant External Links for NPEPPSP1 Gene
- GeneLoc Exon Structure for
- NPEPPSP1
Expression for NPEPPSP1 Gene
Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NPEPPSP1
No Expression Related Data Available
Primer Products
No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NPEPPSP1 Gene
Orthologs for NPEPPSP1 Gene
No data available for Orthologs for NPEPPSP1 Gene
Paralogs for NPEPPSP1 Gene
No data available for Paralogs for NPEPPSP1 Gene
Variants for NPEPPSP1 Gene
Additional Variant Information for NPEPPSP1 Gene
- SNPedia medical, phenotypic, and genealogical associations of SNPs for
- NPEPPSP1
No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Additional dbSNP identifiers (rs#s) and Variation tolerance for NPEPPSP1 Gene
Disorders for NPEPPSP1 Gene
No disorders were found for NPEPPSP1 Gene.
No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NPEPPSP1 Gene
Publications for NPEPPSP1 Gene
- PLEKHA4/kramer Attenuates Dishevelled Ubiquitination to Modulate Wnt and Planar Cell Polarity Signaling. (PMID: 31091453) Shami Shah A … Baskin JM (Cell reports 2019) 3
- Genome-wide CRISPR screen identifies HNRNPL as a prostate cancer dependency regulating RNA splicing. (PMID: 28611215) Fei T … Brown M (Proceedings of the National Academy of Sciences of the United States of America 2017) 3
- A Human Tyrosine Phosphatase Interactome Mapped by Proteomic Profiling. (PMID: 28675297) Kumar P … Maddika S (Journal of proteome research 2017) 3
- In-depth proteomic analyses of exosomes isolated from expressed prostatic secretions in urine. (PMID: 23533145) Principe S … Drake RR (Proteomics 2013) 3
- A census of human soluble protein complexes. (PMID: 22939629) Havugimana PC … Emili A (Cell 2012) 3
No data available for Mastermind for NPEPPSP1 Gene
Products for NPEPPSP1 Gene
- Browse OriGene Antibodies
- Custom Antibody Services
- Browse OriGene ELISA Kits
- Custom Assay Services
- Search Origene for Purified Proteins, MassSpec and Protein Over-expression Lysates for NPEPPSP1
- Origene Custom Protein Services for NPEPPSP1
- Browse OriGene Inhibitory RNA Products For NPEPPSP1
- Browse OriGene qPCR primer pairs and template standards
- Browse CRISPR knockouts for NPEPPSP1
- Custom cloning services - gene synthesis, subcloning, mutagenesis, variant library, vector shuttling
- Browse OriGene miRNA Products For NPEPPSP1
- Browse Sino Biological cDNA Clones
- Browse Sino Biological Recombinant Proteins
- Browse Sino Biological Cell Lysates
- Browse Sino Biological Antibodies
- Browse Sino Biological Assays
- Browse ELISA Kits
- Browse CRO Services
- High-throughput Antibody Production Service
- Protein Production Service
- Epitope Tag Antibodies & Reporter Protein Antibodies
- Lentiviral ORF Clones
- antibodies-online: Search results for available LOC440434 related products ranked by validation data
- antibodies-online: Search results for available LOC440434 related products ranked by validation data
- antibodies-online: Search results for available LOC440434 related products ranked by validation data
- Browse GeneCopoeia Cell Lines
- Search GeneCopoeia for knockout CRISPR/Cas9 clones, lentivirus, and/or AAV products for NPEPPSP1
- Search GeneCopoeia for ORF cDNA, lentivirus, AAV viral particles, and/or promoter clone products for NPEPPSP1
- Search GeneCopoeia for miRNA 3'UTR Target clone products for NPEPPSP1
- Search GeneCopoeia for shRNA, lentivirus, and/or AAV clone products for NPEPPSP1
Sources for NPEPPSP1 Gene
- (1) GeneCards
- (2) HGNC
- (3) NCBI Entrez Gene
- (4) UniProtKB/Swiss-Prot
- (5) Ensembl
- (6) OMIM
- (7) GeneLoc
- (8) Gene Wiki
- (9) UCSC
- (10) PhosphoSitePlus
- (11) Cell Signaling Technology
- (12) GO
- (13) UniProtKB/TrEMBL
- (14) InterPro
- (15) ProtoNet
- (16) Blocks
- (17) MGI
- (18) IUBMB
- (19) KEGG
- (20) MINT
- (21) STRING
- (22) IntAct
- (23) Novoseek
- (24) PharmGKB
- (25) DrugBank
- (26) HMDB
- (27) ASD
- (28) SAGE
- (29) SOURCE
- (30) HomoloGene
- (31) PanEnsembl
- (32) euGenes
- (33) SGD
- (34) FlyBase
- (35) WormBase
- (36) Pseudogene
- (37) DGV
- (38) dbSNP
- (39) GenAtlas
- (40) HGMD
- (41) GAD
- (42) BGMUT
- (43) HuGE
- (44) Atlas
- (45) GenBank
- (46) HORDE
- (47) HUGE
- (48) IMGT
- (49) Leiden
- (50) miRBase
- (51) DME
- (52) OriGene
- (53) PubMed
- (54) R&D Systems
- (55) TGDB
- (56) Tocris
- (57) Abcam
- (58) Novus Biologicals
- (59) ProSpec
- (60) Sino Biological
- (61) GenScript
- (62) Qiagen
- (63) OCA
- (64) Proteopedia
- (65) MOPED
- (66) neXtProt
- (67) Reactome
- (68) GeneGo (Thomson Reuters)
- (69) DISEASES
- (70) SIMAP
- (71) GenomeRNAi
- (72) LifeMap
- (73) miRTarBase
- (74) MalaCards
- (75) Invitrogen
- (76) BitterDB
- (77) ESI-BIO
- (78) RefSeq
- (79) BioSystems
- (80) MaxQB
- (81) IUPHAR
- (82) BioGPS
- (83) Illumina
- (84) COMPARTMENTS
- (85) HOMER
- (86) PaxDb
- (87) ApexBio
- (88) Addgene
- (89) antibodies-online
- (90) CYP
- (91) NONCODE
- (92) TreeFam
- (93) PathCards
- (94) GeneReviews
- (95) GeneTex
- (96) Taconic Biosciences
- (97) GTEx
- (98) ProteomicsDB
- (99) SCBT
- (100) DGIdb
- (101) ClinicalTrials
- (102) RVIS
- (103) SIGNOR
- (104) diseasecard
- (105) NIH Rare Diseases
- (106) Orphanet
- (107) UMLS
- (108) GTR
- (109) Disease Ontology
- (110) Genetics Home Reference
- (111) MeSH
- (112) MedlinePlus
- (113) CDC
- (114) NINDS
- (115) NCBI Bookshelf
- (116) ClinVar
- (117) Gene Damage Index
- (118) HPO
- (119) UDN
- (120) VISTA
- (121) FANTOM5
- (122) ENCODE
- (123) ProSci
- (124) Horizon
- (125) The Signaling Pathways Project (SPP)
- (126) IID
- (127) VectorBuilder
- (128) SNPedia
- (129) BRCA Exchange
- (130) CIViC
- (131) ProteoGenix
- (132) dbSUPER
- (133) TISSUES
- (134) Gene ORGANizer
- (135) abm
- (136) Human Protein Atlas
- (137) GWAS Catalog
- (138) Monarch Initiative
- (139) DataMed
- (140) HumanCyc
- (141) UCNEbase
- (142) EPDnew
- (143) Applied Biosystems
- (144) GlyConnect
- (145) Aminode
- (146) GeneCopoeia
- (147) GPS-Prot
- (148) RNACentral
- (149) LncRNADisease
- (150) LOVD
- (151) miR2Disease
- (152) DiseaseEnhancer
- (153) Boster Bio
- (154) Biorbyt
- (155) Biocompare
- (156) Mastermind
- (157) CTD^2 Dashboard
- (158) CraniofacialAtlas
- (159) GeneImprint
- (160) Synthego
- (161) ENA
- (162) GtRNAdb
- (163) LncBase
- (164) LncBook
- (165) LNCipedia
- (166) Modomics
- (167) PDBe
- (168) Rfam
- (169) SILVA
- (170) snOPY
- (171) SRPDB
- (172) GENCODE
- (173) TarBase
- (174) Signalway Antibody
- (175) Open Targets Platform
- (176) 5SRRNADB
- (177) snoDB
- (178) MirGeneDB