Aliases for NPAS2-AS1 Gene

Data sources for NPAS2-AS1 Gene:

Subcategory (RNA class) for NPAS2-AS1 Gene

lncRNA

Aliases for NPAS2-AS1 Gene

External Ids for NPAS2-AS1 Gene

Summaries for NPAS2-AS1 Gene

GeneCards Summary for NPAS2-AS1 Gene

NPAS2-AS1 (NPAS2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with NPAS2-AS1 include Spermatogenic Failure 3.

Additional gene information for NPAS2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NPAS2-AS1 Gene

Genomics for NPAS2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NPAS2-AS1 Gene
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NPAS2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NPAS2-AS1 Gene

Latest Assembly
chr2:100,970,767-100,978,011
(GRCh38/hg38)
Size:
7,245 bases
Orientation:
Minus strand

Previous Assembly
chr2:101,589,110-101,593,623
(GRCh37/hg19 by Entrez Gene)
Size:
4,514 bases
Orientation:
Minus strand

chr2:101,589,110-101,593,623
(GRCh37/hg19 by Ensembl)
Size:
4,514 bases
Orientation:
Minus strand

Genomic View for NPAS2-AS1 Gene

Genes around NPAS2-AS1 on UCSC Golden Path with GeneCards custom track
NPAS2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Cytogenetic band:
NPAS2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NPAS2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPAS2-AS1 Gene

Proteins for NPAS2-AS1 Gene

Post-translational modifications for NPAS2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPAS2-AS1 Gene

Domains & Families for NPAS2-AS1 Gene

Gene Families for NPAS2-AS1 Gene

genes like me logo Genes that share domains with NPAS2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NPAS2-AS1 Gene

Function for NPAS2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPAS2-AS1 Gene

Localization for NPAS2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NPAS2-AS1 Gene

Pathways & Interactions for NPAS2-AS1 Gene

PathCards logo

SuperPathways for NPAS2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NPAS2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NPAS2-AS1 Gene

Drugs & Compounds for NPAS2-AS1 Gene

No Compound Related Data Available

Transcripts for NPAS2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NPAS2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005183FA_9606 lncRNA 493 4

Ensembl: ENST00000439150 (view in UCSC) ,

LncBook: HSALNT0036515,

LNCipedia: lnc-TBC1D8-2:3,

NONCODE: NONHSAT072799.2,

URS000075CE7A_9606 lncRNA 774 3

RefSeq: NR_110213,

LncBook: HSALNT0036514,

LNCipedia: lnc-TBC1D8-2:4,

URS0000EECB5B_9606 lncRNA 1508 1

Ensembl: ENST00000433012 (view in UCSC) ,

URS0000EF651B_9606 lncRNA 1279 1

Ensembl: ENST00000446644 (view in UCSC) ,

URS0000E8D390_9606 lncRNA 1171 1

Ensembl: ENST00000652285 (view in UCSC) ,

NPAS2-AS1 in the GeneCaRNA (GeneCards ncRNA compendium) hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NPAS2-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for NPAS2-AS1 Gene

No ASD Table

Relevant External Links for NPAS2-AS1 Gene

GeneLoc Exon Structure for
NPAS2-AS1

Expression for NPAS2-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NPAS2-AS1 Gene

Orthologs for NPAS2-AS1 Gene

Evolution for NPAS2-AS1 Gene

ENSEMBL:
Gene Tree for NPAS2-AS1 (if available)
TreeFam:
Gene Tree for NPAS2-AS1 (if available)

No data available for Orthologs for NPAS2-AS1 Gene

Paralogs for NPAS2-AS1 Gene

No data available for Paralogs for NPAS2-AS1 Gene

Variants for NPAS2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for NPAS2-AS1 Gene

SNP ID Clinical significance and condition Chr 02 pos Variation AA Info Type
rs116479799 Benign: not provided 100,974,889(-) G/A
NM_002518.4(NPAS2):c.1227G>A (p.Ser409=)
SYNONYMOUS
rs116596342 Benign: not provided 100,974,814(-) A/G
NM_002518.4(NPAS2):c.1152A>G (p.Ser384=)
SYNONYMOUS
rs144494121 Likely Benign: not provided 100,974,862(-) G/C
NM_002518.4(NPAS2):c.1200G>C (p.Ser400=)
SYNONYMOUS
rs146893880 Benign: not provided 100,974,878(-) C/G
NM_002518.4(NPAS2):c.1216C>G (p.His406Asp)
MISSENSE
rs200967952 Benign: not provided 100,974,910(-) C/T
NM_002518.4(NPAS2):c.1248C>T (p.His416=)
SYNONYMOUS

dbSNP identifiers (rs#s) for variants without ClinVar clinical significance for NPAS2-AS1 Gene

All consequence types are included: molecular consequences (e.g. missense, synonymous), and location-based (e.g. intron, upstream).

Structural Variations from Database of Genomic Variants (DGV) for NPAS2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv834316 CNV gain 17160897

Additional Variant Information for NPAS2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NPAS2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NPAS2-AS1 Gene

Disorders for NPAS2-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for NPAS2-AS1 Gene - From: CVR

Disorder Aliases PubMed IDs
spermatogenic failure 3
  • spgf3
- elite association - COSMIC cancer census association via MalaCards
genes like me logo Genes that share disorders with NPAS2-AS1: view

No data available for UniProtKB/Swiss-Prot , Genatlas and External Links for NPAS2-AS1 Gene

Publications for NPAS2-AS1 Gene

No publications were found for NPAS2-AS1 Gene.

No data available for Mastermind for NPAS2-AS1 Gene

Products for NPAS2-AS1 Gene

Sources for NPAS2-AS1 Gene