Aliases for NPAS2-AS1 Gene

Subcategory (RNA class) for NPAS2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for NPAS2-AS1 Gene

  • NPAS2 Antisense RNA 1 2 3 5
  • NPAS2-AS1 2 5
  • NONHSAG028719.2 91
  • HSALNG0017338 164
  • Lnc-TBC1D8-2 165

External Ids for NPAS2-AS1 Gene

Summaries for NPAS2-AS1 Gene

GeneCards Summary for NPAS2-AS1 Gene

NPAS2-AS1 (NPAS2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NPAS2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NPAS2-AS1 Gene

Genomics for NPAS2-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NPAS2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J100976 Enhancer 0.8 Ensembl ENCODE 631.3 +0.3 333 3.4 JUND RUNX3 BCLAF1 FOS POLR2A JUNB BHLHE40 BATF EBF1 RB1 NPAS2-AS1 RPL31 ENSG00000223947 HSALNG0017337 NPAS2
GH02J101001 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 23.8 -25.3 -25336 4 RNF2 SP1 CREB1 GATAD2A ATF7 TEAD4 REST ZNF629 TFE3 SOX13 ENSG00000223947 RPL31 NPAS2-AS1 CNOT11 NPAS2 LOC100420429 TBC1D8
GH02J101148 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 9.8 -173.0 -172969 5.2 HNRNPL GATAD2A CTCF PRDM10 TFE3 IKZF1 ZNF692 RELA ZIC2 RBFOX2 TBC1D8-AS1 NPAS2-AS1 SNORD89 TBC1D8 RF00017-3284 lnc-TBC1D8-1 RPL31
GH02J101007 Enhancer 0.8 Ensembl ENCODE 24.6 -30.3 -30298 1.5 BACH1 PRDM1 RBFOX2 POLR2A RBM22 MIER3 SUPT5H SSRP1 STAT5A PAF1 NPAS2-AS1 NPAS2 ENSG00000223947 RPL31 LOC100420429 TBC1D8
GH02J101080 Enhancer 0.9 Ensembl ENCODE dbSUPER 20.5 -103.0 -103033 2.5 CEBPG REST CEBPB SP1 ATF3 NR3C1 RBM22 FOSL2 SIN3A HLF NPAS2-AS1 RPL31 ENSG00000223947 NPAS2 TBC1D8-AS1 TBC1D8 BBIP1P1 lnc-RPL31-3 lnc-RPL31-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NPAS2-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NPAS2-AS1 Gene

Genomic Locations for NPAS2-AS1 Gene
chr2:100,970,767-100,978,011
(GRCh38/hg38)
Size:
7,245 bases
Orientation:
Minus strand
chr2:101,589,110-101,593,623
(GRCh37/hg19)
Size:
4,514 bases
Orientation:
Minus strand

Genomic View for NPAS2-AS1 Gene

Genes around NPAS2-AS1 on UCSC Golden Path with GeneCards custom track
NPAS2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
NPAS2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NPAS2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPAS2-AS1 Gene

Proteins for NPAS2-AS1 Gene

Post-translational modifications for NPAS2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPAS2-AS1 Gene

Domains & Families for NPAS2-AS1 Gene

Gene Families for NPAS2-AS1 Gene

genes like me logo Genes that share domains with NPAS2-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NPAS2-AS1 Gene

Function for NPAS2-AS1 Gene

Phenotypes From GWAS Catalog for NPAS2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPAS2-AS1 Gene

Localization for NPAS2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NPAS2-AS1 Gene

Pathways & Interactions for NPAS2-AS1 Gene

PathCards logo

SuperPathways for NPAS2-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NPAS2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NPAS2-AS1 Gene

Drugs & Compounds for NPAS2-AS1 Gene

No Compound Related Data Available

Transcripts for NPAS2-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NPAS2-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075CE7A_9606 lncRNA 771 4

HGNC: 40408,

RefSeq: NR_110213,

LncBook: HSALNT0036514,

LNCipedia: lnc-TBC1D8-2:4,

URS00005183FA_9606 lncRNA 493 4

Ensembl: ENST00000439150 (view in UCSC) ,

LncBook: HSALNT0036515,

LNCipedia: lnc-TBC1D8-2:3,

NONCODE: NONHSAT072799.2,

URS0000EECB5B_9606 lncRNA 1508 1

Ensembl: ENST00000433012 (view in UCSC) ,

URS0000EF651B_9606 lncRNA 1279 1

Ensembl: ENST00000446644 (view in UCSC) ,

URS0000E8D390_9606 lncRNA 1171 1

Ensembl: ENST00000652285 (view in UCSC) ,

NPAS2-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NPAS2-AS1 Gene

1 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for NPAS2-AS1 Gene

No ASD Table

Relevant External Links for NPAS2-AS1 Gene

GeneLoc Exon Structure for
NPAS2-AS1

Expression for NPAS2-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NPAS2-AS1 Gene

Orthologs for NPAS2-AS1 Gene

Evolution for NPAS2-AS1 Gene

ENSEMBL:
Gene Tree for NPAS2-AS1 (if available)
TreeFam:
Gene Tree for NPAS2-AS1 (if available)

No data available for Orthologs for NPAS2-AS1 Gene

Paralogs for NPAS2-AS1 Gene

No data available for Paralogs for NPAS2-AS1 Gene

Variants for NPAS2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for NPAS2-AS1 Gene

SNP ID Clinical significance and condition Chr 02 pos Variation AA Info Type
712357 Benign: not provided 100,974,814(-) A/G SYNONYMOUS_VARIANT
722925 Likely Benign: not provided 100,974,862(-) G/C SYNONYMOUS_VARIANT
733860 Benign: not provided 100,974,910(-) C/T SYNONYMOUS_VARIANT
759157 Likely Benign: not provided 100,974,953(-) G/A INTRON_VARIANT
773841 Benign: not provided 100,974,889(-) G/A SYNONYMOUS_VARIANT

Additional dbSNP identifiers (rs#s) for NPAS2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for NPAS2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv834316 CNV gain 17160897

Additional Variant Information for NPAS2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NPAS2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NPAS2-AS1 Gene

Disorders for NPAS2-AS1 Gene

No disorders were found for NPAS2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NPAS2-AS1 Gene

Publications for NPAS2-AS1 Gene

No publications were found for NPAS2-AS1 Gene.

No data available for Mastermind for NPAS2-AS1 Gene

Products for NPAS2-AS1 Gene

Sources for NPAS2-AS1 Gene