NPAS2-AS1 Gene (RNA Gene)

NPAS2 Antisense RNA 1

GC02M100973
GIFtS:
6

Aliases for NPAS2-AS1 Gene

Subcategory (RNA class) for NPAS2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for NPAS2-AS1 Gene

  • NPAS2 Antisense RNA 1 2 3
  • NONHSAG028719 92
  • HSALNG0017338 167
  • Lnc-TBC1D8-2 168
  • NPAS2-AS1 2

External Ids for NPAS2-AS1 Gene

Summaries for NPAS2-AS1 Gene

GeneCards Summary for NPAS2-AS1 Gene

NPAS2-AS1 (NPAS2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NPAS2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NPAS2-AS1 Gene

Genomics for NPAS2-AS1 Gene

GeneHancer (GH) Regulatory Elements for NPAS2-AS1 Gene

Promoters and enhancers for NPAS2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH02J100976 Enhancer 0.8 Ensembl ENCODE 500.7 -0.5 -517 3.4 JUND FOS ZNF384 POLR2A BATF EBF1 RB1 PAX5 SMARCA4 JUNB ENSG00000230140 NPAS2-AS1 NPAS2
GH02J100957 Enhancer 0.8 Ensembl ENCODE 0.4 +18.2 18160 3.6 RBM22 NR2F2 JUND EZH2 CEBPG PRDM10 RAD21 RXRA ATF4 GATA2 ENSG00000230140 NPAS2-AS1 HSALNG0017337 NPAS2
GH02J100934 Enhancer 0.7 Ensembl ENCODE 0.3 +41.6 41560 1.6 JUND TOE1 RBM22 MITF ELF4 ATF2 USF2 RAD51 CBFA2T2 USF1 HSALNG0017337 NPAS2-AS1 NPAS2
GH02J100941 Enhancer 0.5 Ensembl 0.3 +35.8 35760 1.6 POLR2G JUND IRF1 CEBPG RXRA HNF4A BHLHE40 AGO2 ATF3 SP1 ENSG00000230140 NPAS2 HSALNG0017337 NPAS2-AS1
GH02J100949 Enhancer 0.4 Ensembl 0.3 +27.2 27160 1.6 ATF4 SPI1 RNF2 CBX8 ENSG00000230140 NPAS2 ENSG00000232034 TBC1D8 HSALNG0017337 NPAS2-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NPAS2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NPAS2-AS1 Gene

Genomic Locations for NPAS2-AS1 Gene
chr2:100,972,648-100,977,161
(GRCh38/hg38)
Size:
4,514 bases
Orientation:
Minus strand

Genomic View for NPAS2-AS1 Gene

Genes around NPAS2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NPAS2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NPAS2-AS1 Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for NPAS2-AS1 Gene

Proteins for NPAS2-AS1 Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

Post-translational modifications for NPAS2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NPAS2-AS1 Gene

Domains & Families for NPAS2-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NPAS2-AS1 Gene

Function for NPAS2-AS1 Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Phenotypes From GWAS Catalog for NPAS2-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPAS2-AS1 Gene

Localization for NPAS2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NPAS2-AS1 Gene

Pathways & Interactions for NPAS2-AS1 Gene

PathCards logo

SuperPathways for NPAS2-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for NPAS2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NPAS2-AS1 Gene

Drugs & Compounds for NPAS2-AS1 Gene

Products:

  1. Drug
No Compound Related Data Available

Transcripts for NPAS2-AS1 Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for NPAS2-AS1 Gene

3 RNACentral transcripts :
1 REFSEQ mRNAs :
1 NCBI additional mRNA sequence :
2 NONCODE transcripts :
2 LncBook transcripts :
3 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for NPAS2-AS1 Gene

No ASD Table

Relevant External Links for NPAS2-AS1 Gene

GeneLoc Exon Structure for
NPAS2-AS1

Expression for NPAS2-AS1 Gene

Products:

  1. Primer
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NPAS2-AS1 Gene

Orthologs for NPAS2-AS1 Gene

No data available for Orthologs and Evolution for NPAS2-AS1 Gene

Paralogs for NPAS2-AS1 Gene

No data available for Paralogs for NPAS2-AS1 Gene

Variants for NPAS2-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for NPAS2-AS1 Gene

SNP ID Clinical significance and condition Chr 02 pos Variation AA Info Type
rs879253743 Likely Pathogenic: Non-obstructive azoospermia 100,975,538(-) C/G MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for NPAS2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for NPAS2-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv834316 CNV gain 17160897

Additional Variant Information for NPAS2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NPAS2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NPAS2-AS1 Gene

Disorders for NPAS2-AS1 Gene

No disorders were found for NPAS2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NPAS2-AS1 Gene

Publications for NPAS2-AS1 Gene

No publications were found for NPAS2-AS1 Gene.

No data available for Mastermind for NPAS2-AS1 Gene

Products for NPAS2-AS1 Gene

Sources for NPAS2-AS1 Gene