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Aliases for NPAP1L Gene

Aliases for NPAP1L Gene

  • Nuclear Pore Associated Protein 1 Like 2 3 5
  • Putative UPF0607 Protein ENSP00000381418 3 3
  • UPF0607 Protein ENSP00000381418-Like 3

External Ids for NPAP1L Gene

Summaries for NPAP1L Gene

GeneCards Summary for NPAP1L Gene

NPAP1L (Nuclear Pore Associated Protein 1 Like) is a Protein Coding gene.

Additional gene information for NPAP1L Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NPAP1L Gene

Genomics for NPAP1L Gene

Genomic Locations for NPAP1L Gene

Genomic Locations for NPAP1L Gene
chr16:60,358,455-60,359,763
(GRCh38/hg38)
Size:
1,309 bases
Orientation:
Minus strand
chr16:60,392,359-60,393,696
(GRCh37/hg19)
Size:
1,338 bases
Orientation:
Minus strand

Genomic View for NPAP1L Gene

Genes around NPAP1L on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NPAP1L Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NPAP1L Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NPAP1L Gene

No data available for GeneHancer (GH) Regulatory Elements for NPAP1L Gene

Proteins for NPAP1L Gene

Post-translational modifications for NPAP1L Gene

No Post-translational modifications

Other Protein References for NPAP1L Gene

REFSEQ proteins:

No data available for DME Specific Peptides for NPAP1L Gene

Domains & Families for NPAP1L Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NPAP1L Gene

Function for NPAP1L Gene

Phenotypes From GWAS Catalog for NPAP1L Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NPAP1L Gene

Localization for NPAP1L Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NPAP1L Gene

Pathways & Interactions for NPAP1L Gene

PathCards logo

SuperPathways for NPAP1L Gene

No Data Available

Interacting Proteins for NPAP1L Gene

Gene Ontology (GO) - Biological Process for NPAP1L Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NPAP1L Gene

Drugs & Compounds for NPAP1L Gene

No Compound Related Data Available

Transcripts for NPAP1L Gene

mRNA/cDNA for NPAP1L Gene

(1) REFSEQ mRNAs :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for NPAP1L Gene

No ASD Table

Relevant External Links for NPAP1L Gene

GeneLoc Exon Structure for
NPAP1L
ECgene alternative splicing isoforms for
NPAP1L

Expression for NPAP1L Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NPAP1L Gene

Orthologs for NPAP1L Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for NPAP1L Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia LOC100613566 34
  • 98.13 (n)
Species where no ortholog for NPAP1L was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NPAP1L Gene

ENSEMBL:
Gene Tree for NPAP1L (if available)
TreeFam:
Gene Tree for NPAP1L (if available)

Paralogs for NPAP1L Gene

No data available for Paralogs for NPAP1L Gene

Variants for NPAP1L Gene

Sequence variations from dbSNP and Humsavar for NPAP1L Gene

SNP ID Clin Chr 16 pos Variation AA Info Type
rs1001733780 -- 60,361,205(-) A/C upstream_transcript_variant
rs1001750043 -- 60,360,452(-) C/T upstream_transcript_variant
rs1004028579 -- 60,358,693(-) GGGG/GGGGG coding_sequence_variant, frameshift
rs1004486416 -- 60,358,880(-) C/G coding_sequence_variant, missense_variant
rs1005998182 -- 60,360,911(-) C/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for NPAP1L Gene

Variant ID Type Subtype PubMed ID
nsv977986 CNV duplication 23825009

Additional Variant Information for NPAP1L Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NPAP1L

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NPAP1L Gene

Disorders for NPAP1L Gene

No disorders were found for NPAP1L Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NPAP1L Gene

Publications for NPAP1L Gene

  1. The sequence and analysis of duplication-rich human chromosome 16. (PMID: 15616553) Martin J … Pennacchio LA (Nature 2004) 3 58

Products for NPAP1L Gene

Sources for NPAP1L Gene

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