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Aliases for NOTCH2NLR Gene

Aliases for NOTCH2NLR Gene

  • Notch 2 N-Terminal Like R 2 3 5
  • Neuroblastoma Breakpoint Family Member 26 13
  • Notch Homolog 2 N-Terminal-Like Protein 3
  • Notch Homolog 2 N-Terminal-Like-Related 3
  • AC253572.1 5
  • NOTCH2NLD 3

External Ids for NOTCH2NLR Gene

Summaries for NOTCH2NLR Gene

GeneCards Summary for NOTCH2NLR Gene

NOTCH2NLR (Notch 2 N-Terminal Like R) is a Pseudogene. An important paralog of this gene is NOTCH2.

Additional gene information for NOTCH2NLR Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NOTCH2NLR Gene

Genomics for NOTCH2NLR Gene

GeneHancer (GH) Regulatory Elements for NOTCH2NLR Gene

Promoters and enhancers for NOTCH2NLR Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J120723 Promoter 0.5 Ensembl 600.7 +0.7 655 5.2 LOC105378944 NBPF26 NOTCH2NLR LOC105378943 TRN-GTT7-1
GH01J120765 Enhancer 0.2 Ensembl 0.3 +41.2 41155 0.2 NBPF26 NOTCH2NLR TRN-GTT7-1
GH01J120799 Enhancer 0.2 Ensembl 0.2 +76.2 76155 3 TRN-GTT7-1 NBPF26 NOTCH2NLR
GH01J120794 Enhancer 0.2 Ensembl 0.2 +71.6 71554 5 TRN-GTT7-1 NBPF26 NOTCH2NLR
GH01J120805 Enhancer 0.2 Ensembl 0.2 +81.4 81355 0.6 TRN-GTT7-1 NBPF26 NOTCH2NLR
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NOTCH2NLR on UCSC Golden Path with GeneCards custom track

Genomic Locations for NOTCH2NLR Gene

Genomic Locations for NOTCH2NLR Gene
chr1:120,723,946-120,805,451
(GRCh38/hg38)
Size:
81,506 bases
Orientation:
Plus strand

Genomic View for NOTCH2NLR Gene

Genes around NOTCH2NLR on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NOTCH2NLR Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NOTCH2NLR Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NOTCH2NLR Gene

Proteins for NOTCH2NLR Gene

  • Protein details for NOTCH2NLR Gene (UniProtKB/TrEMBL)

    Protein Symbol:
    A0A096LNW5-A0A096LNW5_HUMAN
    Recommended name:
    Neuroblastoma breakpoint family member 26
    Protein Accession:
    A0A096LNW5

    Protein attributes for NOTCH2NLR Gene

    Size:
    236 amino acids
    Molecular mass:
    25942 Da
    Quaternary structure:
    No Data Available

neXtProt entry for NOTCH2NLR Gene

Post-translational modifications for NOTCH2NLR Gene

No Post-translational modifications

Other Protein References for NOTCH2NLR Gene

No data available for DME Specific Peptides for NOTCH2NLR Gene

Domains & Families for NOTCH2NLR Gene

Protein Domains for NOTCH2NLR Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NOTCH2NLR: view

No data available for Gene Families , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NOTCH2NLR Gene

Function for NOTCH2NLR Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NOTCH2NLR Gene

Localization for NOTCH2NLR Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NOTCH2NLR Gene

Pathways & Interactions for NOTCH2NLR Gene

PathCards logo

SuperPathways for NOTCH2NLR Gene

No Data Available

Interacting Proteins for NOTCH2NLR Gene

Gene Ontology (GO) - Biological Process for NOTCH2NLR Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NOTCH2NLR Gene

Drugs & Compounds for NOTCH2NLR Gene

No Compound Related Data Available

Transcripts for NOTCH2NLR Gene

mRNA/cDNA for NOTCH2NLR Gene

(2) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NOTCH2NLR Gene

No ASD Table

Relevant External Links for NOTCH2NLR Gene

GeneLoc Exon Structure for
NOTCH2NLR
ECgene alternative splicing isoforms for
NOTCH2NLR

Expression for NOTCH2NLR Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NOTCH2NLR Gene

Orthologs for NOTCH2NLR Gene

Evolution for NOTCH2NLR Gene

ENSEMBL:
Gene Tree for NOTCH2NLR (if available)
TreeFam:
Gene Tree for NOTCH2NLR (if available)

No data available for Orthologs for NOTCH2NLR Gene

Paralogs for NOTCH2NLR Gene

Paralogs for NOTCH2NLR Gene

genes like me logo Genes that share paralogs with NOTCH2NLR: view

Variants for NOTCH2NLR Gene

Sequence variations from dbSNP and Humsavar for NOTCH2NLR Gene

SNP ID Clin Chr 01 pos Variation AA Info Type
rs1156237849 -- 120,766,054(+) G/A intron_variant
rs1156264132 -- 120,782,433(+) T/C intron_variant
rs1156281203 -- 120,799,289(+) G/T intron_variant
rs1156296561 -- 120,728,330(+) T/C intron_variant
rs1156369260 -- 120,800,775(+) A/G intron_variant

Additional Variant Information for NOTCH2NLR Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NOTCH2NLR

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NOTCH2NLR Gene

Disorders for NOTCH2NLR Gene

No disorders were found for NOTCH2NLR Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NOTCH2NLR Gene

Publications for NOTCH2NLR Gene

  1. Human-Specific NOTCH2NL Genes Affect Notch Signaling and Cortical Neurogenesis. (PMID: 29856954) Fiddes IT … Haussler D (Cell 2018) 2 3 58
  2. Human-Specific NOTCH2NL Genes Expand Cortical Neurogenesis through Delta/Notch Regulation. (PMID: 29856955) Suzuki IK … Vanderhaeghen P (Cell 2018) 2 3 58
  3. Transcriptional fates of human-specific segmental duplications in brain. (PMID: 30228200) Dougherty ML … Eichler EE (Genome research 2018) 3 58
  4. The DNA sequence and biological annotation of human chromosome 1. (PMID: 16710414) Gregory SG … Prigmore E (Nature 2006) 13 58

Products for NOTCH2NLR Gene

Sources for NOTCH2NLR Gene

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