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Aliases for NOP53-AS1 Gene

Subcategory (RNA class) for NOP53-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for NOP53-AS1 Gene

  • NOP53 Antisense RNA 1 2 3 5
  • GLTSCR2 Antisense RNA 1 2 3
  • CTD-2571L23.6 3
  • GLTSCR2-AS1 3

External Ids for NOP53-AS1 Gene

Previous HGNC Symbols for NOP53-AS1 Gene

  • GLTSCR2-AS1

Summaries for NOP53-AS1 Gene

GeneCards Summary for NOP53-AS1 Gene

NOP53-AS1 (NOP53 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NOP53-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NOP53-AS1 Gene

Genomics for NOP53-AS1 Gene

GeneHancer (GH) Regulatory Elements for NOP53-AS1 Gene

Promoters and enhancers for NOP53-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH19J047770 Enhancer 0.8 ENCODE dbSUPER 600.7 -1.7 -1659 0.8 SMARCA4 PRDM10 SOX6 MAFK RCOR1 ZNF143 SIN3A ZNF217 CBFA2T3 NOP53-AS1 SELENOW GC19P047775
GH19J047225 Promoter/Enhancer 2.4 EPDnew Ensembl ENCODE dbSUPER 144.8 +539.5 539492 8.3 HDGF SP1 ZNF652 ZFX CC2D1A ELF3 ZKSCAN8 MNT CBFA2T2 ZNF148 BBC3 BICRA ENSG00000268810 NOP53-AS1 CCDC9 NOP53 PPP5D1 INAFM1 LIG1 SNORD23
GH19J047242 Promoter/Enhancer 2.2 EPDnew FANTOM5 ENCODE dbSUPER 98.6 +525.0 525049 2.5 ZNF652 SP1 CTCF ZFX CC2D1A ELF3 MNT CBFA2T2 ZNF148 NKRF BBC3 ZC3H4 BICRA ENSG00000268810 NOP53-AS1 CCDC9 NOP53 SLC1A5 SNORD23 ENSG00000268746
GH19J047712 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE dbSUPER 56.6 +54.6 54647 2.8 CTCF CC2D1A NCOA6 ZNF404 ZNF680 EGR1 ZNF560 GMEB1 POLR2A ARID2 EHD2 ZC3H4 BICRA NOP53-AS1 GRWD1 CYTH2 CCDC9 KDELR1 NOP53 ENSG00000268093
GH19J048253 Promoter/Enhancer 2.6 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 42.4 -488.6 -488558 7.2 SP1 CC2D1A ELF3 CTCF ZKSCAN8 SIX5 NKRF POLR2A MLLT1 CEBPG CARD8-AS1 CARD8 BICRA NOP53-AS1 GRWD1 SNRNP70 KDELR1 NOP53 RPL18 SNORD23
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NOP53-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NOP53-AS1 Gene

Genomic Locations for NOP53-AS1 Gene
chr19:47,757,036-47,768,840
(GRCh38/hg38)
Size:
11,805 bases
Orientation:
Minus strand
chr19:48,260,293-48,272,097
(GRCh37/hg19)
Size:
11,805 bases
Orientation:
Minus strand

Genomic View for NOP53-AS1 Gene

Genes around NOP53-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NOP53-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NOP53-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NOP53-AS1 Gene

Proteins for NOP53-AS1 Gene

Post-translational modifications for NOP53-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NOP53-AS1 Gene

Domains & Families for NOP53-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NOP53-AS1 Gene

Function for NOP53-AS1 Gene

Phenotypes From GWAS Catalog for NOP53-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NOP53-AS1 Gene

Localization for NOP53-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NOP53-AS1 Gene

Pathways & Interactions for NOP53-AS1 Gene

PathCards logo

SuperPathways for NOP53-AS1 Gene

No Data Available

Interacting Proteins for NOP53-AS1 Gene

Gene Ontology (GO) - Biological Process for NOP53-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NOP53-AS1 Gene

Drugs & Compounds for NOP53-AS1 Gene

No Compound Related Data Available

Transcripts for NOP53-AS1 Gene

mRNA/cDNA for NOP53-AS1 Gene

(1) Additional mRNA sequences :
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(1) RNA Central transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for NOP53-AS1 Gene

No ASD Table

Relevant External Links for NOP53-AS1 Gene

GeneLoc Exon Structure for
NOP53-AS1
ECgene alternative splicing isoforms for
NOP53-AS1

Expression for NOP53-AS1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NOP53-AS1 Gene

Orthologs for NOP53-AS1 Gene

Evolution for NOP53-AS1 Gene

ENSEMBL:
Gene Tree for NOP53-AS1 (if available)
TreeFam:
Gene Tree for NOP53-AS1 (if available)

No data available for Orthologs for NOP53-AS1 Gene

Paralogs for NOP53-AS1 Gene

No data available for Paralogs for NOP53-AS1 Gene

Variants for NOP53-AS1 Gene

Sequence variations from dbSNP and Humsavar for NOP53-AS1 Gene

SNP ID Clin Chr 19 pos Variation AA Info Type
rs1000100034 -- 47,757,808(-) C/T intron_variant
rs1000518638 -- 47,761,734(-) A/G intron_variant
rs1000587195 -- 47,762,704(-) G/T intron_variant
rs1000731479 -- 47,766,113(-) G/A intron_variant
rs1001643158 -- 47,769,918(-) A/C upstream_transcript_variant

Additional Variant Information for NOP53-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NOP53-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NOP53-AS1 Gene

Disorders for NOP53-AS1 Gene

Additional Disease Information for NOP53-AS1

No disorders were found for NOP53-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NOP53-AS1 Gene

Publications for NOP53-AS1 Gene

  1. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for NOP53-AS1 Gene

Sources for NOP53-AS1 Gene

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