Aliases for NOP14-AS1 Gene

Subcategory (RNA class) for NOP14-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for NOP14-AS1 Gene

  • NOP14 Antisense RNA 1 2 3 5
  • NOP14 Antisense RNA 1 (Non-Protein Coding) 2 3
  • NOP14-AS1 2 168
  • Chromosome 4 Open Reading Frame 10 2
  • NONHSAG037320 92
  • HSALNG0032409 167
  • RES4-24 3
  • C4orf10 3

External Ids for NOP14-AS1 Gene

Previous HGNC Symbols for NOP14-AS1 Gene

  • C4orf10

Summaries for NOP14-AS1 Gene

GeneCards Summary for NOP14-AS1 Gene

NOP14-AS1 (NOP14 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NOP14-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NOP14-AS1 Gene

Genomics for NOP14-AS1 Gene

GeneHancer (GH) Regulatory Elements for NOP14-AS1 Gene

Promoters and enhancers for NOP14-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J002930 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 512.8 -0.7 -680 8.2 ZBTB40 EP300 SIN3A NRF1 POLR2G SP1 NCOR1 PHF8 ZFX ZNF639 NOP14-AS1 MFSD10 GRK4 HTT HTT-AS lnc-NOP14-4 NOP14
GH04J002007 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE CraniofacialAtlas 22.6 -925.9 -925881 3.6 HNRNPK ZNF217 EP300 CTCF SIN3A NRF1 POLR2G USF1 GTF2E2 PHF8 NELFA lnc-NSD2-1 NOP14-AS1 MAEA SCARNA22 C4orf48 SH3BP2 NSD2 MXD4 ENSG00000251148
GH04J002867 Promoter/Enhancer 1.7 EPDnew Ensembl ENCODE dbSUPER 11.7 -66.7 -66658 2.4 PHB2 ZBTB11 TRIM28 TARDBP HES1 MYC CTBP1 HDAC3 NR2F2 NCOR1 ADD1 GRK4 TNIP2 MFSD10 NOP14-AS1 ENSG00000287099 lnc-SH3BP2-3 lnc-SH3BP2-2
GH04J002792 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 7.4 -134.6 -134612 15.3 EP300 TCF12 POLR2G USF1 NCOR1 JUND FOS ZNF639 ZIC2 POLR2A SH3BP2 ADD1 TNIP2 NOP14-AS1 GRK4 ZFYVE28 HTT lnc-ADD1-6 lnc-TNIP2-1
GH04J002960 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 8.7 +28.1 28119 4.8 FOXK2 HNRNPK ZBTB40 ZNF217 EP300 CTCF SIN3A NRF1 TCF12 MYC GRK4 NONHSAG037321.2 NOP14 SH3BP2 NOP14-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NOP14-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NOP14-AS1 Gene

Genomic Locations for NOP14-AS1 Gene
chr4:2,934,882-2,961,738
(GRCh38/hg38)
Size:
26,857 bases
Orientation:
Plus strand
chr4:2,936,626-2,963,465
(GRCh37/hg19)
Size:
26,840 bases
Orientation:
Plus strand

Genomic View for NOP14-AS1 Gene

Genes around NOP14-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NOP14-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NOP14-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NOP14-AS1 Gene

Proteins for NOP14-AS1 Gene

Post-translational modifications for NOP14-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NOP14-AS1 Gene

Domains & Families for NOP14-AS1 Gene

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NOP14-AS1 Gene

Function for NOP14-AS1 Gene

Phenotypes From GWAS Catalog for NOP14-AS1 Gene

genes like me logo Genes that share phenotypes with NOP14-AS1: view

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NOP14-AS1 Gene

Localization for NOP14-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NOP14-AS1 Gene

Pathways & Interactions for NOP14-AS1 Gene

PathCards logo

SuperPathways for NOP14-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for NOP14-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NOP14-AS1 Gene

Drugs & Compounds for NOP14-AS1 Gene

No Compound Related Data Available

Transcripts for NOP14-AS1 Gene

mRNA/cDNA for NOP14-AS1 Gene

26 RNACentral transcripts :
1 REFSEQ mRNAs :
8 NCBI additional mRNA sequence :
13 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
11 NONCODE transcripts :
11 LncBook transcripts :
7 LNCipedia transcripts :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for NOP14-AS1 Gene

No ASD Table

Relevant External Links for NOP14-AS1 Gene

GeneLoc Exon Structure for
NOP14-AS1

Expression for NOP14-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NOP14-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NOP14-AS1

SOURCE GeneReport for Unigene cluster for NOP14-AS1 Gene:

Hs.398178
genes like me logo Genes that share expression patterns with NOP14-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NOP14-AS1 Gene

Orthologs for NOP14-AS1 Gene

Evolution for NOP14-AS1 Gene

ENSEMBL:
Gene Tree for NOP14-AS1 (if available)
TreeFam:
Gene Tree for NOP14-AS1 (if available)

No data available for Orthologs for NOP14-AS1 Gene

Paralogs for NOP14-AS1 Gene

No data available for Paralogs for NOP14-AS1 Gene

Variants for NOP14-AS1 Gene

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for NOP14-AS1 Gene

SNP ID Clinical significance and condition Chr 04 pos Variation AA Info Type
731089 Likely Benign: not provided 2,939,339(+) C/G MISSENSE_VARIANT,INTRON_VARIANT

Additional dbSNP identifiers (rs#s) for NOP14-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for NOP14-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1551216 CNV deletion 17803354
esv2726835 CNV deletion 23290073
esv2726865 CNV deletion 23290073
esv2726866 CNV deletion 23290073
esv2726867 CNV deletion 23290073
esv3599412 CNV gain 21293372
esv3599414 CNV gain 21293372
nsv461163 CNV gain 19166990
nsv474400 CNV novel sequence insertion 20440878
nsv593437 CNV gain 21841781
nsv593438 CNV gain 21841781

Additional Variant Information for NOP14-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NOP14-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NOP14-AS1 Gene

Disorders for NOP14-AS1 Gene

Additional Disease Information for NOP14-AS1

No disorders were found for NOP14-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NOP14-AS1 Gene

Publications for NOP14-AS1 Gene

  1. The primary structure and genomic organization of five novel transcripts located close to the Huntington's disease gene on human chromosome 4p16.3. (PMID: 9734812) Hadano S … Ikeda JE (DNA research : an international journal for rapid publication of reports on genes and genomes 1998) 2 3 54
  2. VIRMA mediates preferential m6A mRNA methylation in 3'UTR and near stop codon and associates with alternative polyadenylation. (PMID: 29507755) Yue Y … Liu J (Cell discovery 2018) 3 54
  3. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  4. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

Products for NOP14-AS1 Gene

Sources for NOP14-AS1 Gene