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Aliases for NOP14-AS1 Gene

Subcategory (RNA class) for NOP14-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for NOP14-AS1 Gene

  • NOP14 Antisense RNA 1 2 3 5
  • NOP14 Antisense RNA 1 (Non-Protein Coding) 2 3
  • Chromosome 4 Open Reading Frame 10 2
  • RES4-24 3
  • C4orf10 3

External Ids for NOP14-AS1 Gene

Previous HGNC Symbols for NOP14-AS1 Gene

  • C4orf10

Summaries for NOP14-AS1 Gene

GeneCards Summary for NOP14-AS1 Gene

NOP14-AS1 (NOP14 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class. Diseases associated with NOP14-AS1 include Astrocytoma.

Additional gene information for NOP14-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NOP14-AS1 Gene

Genomics for NOP14-AS1 Gene

GeneHancer (GH) Regulatory Elements for NOP14-AS1 Gene

Promoters and enhancers for NOP14-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH04J002930 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 671.4 -0.7 -697 8.2 HDGF PKNOX1 SMAD1 FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 IRF4 NOP14-AS1 MFSD10 FAM193A GRK4 RNF4 NELFA HAUS3 HTT HTT-AS GC04P002904
GH04J002007 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 21.3 -925.7 -925693 3.2 HDGF PKNOX1 FOXA2 ARNT ZFP64 ARID4B SIN3A DMAP1 ZNF2 IRF4 NELFA HAUS3 NOP14-AS1 MFSD10 FAM193A RNF4 MAEA SCARNA22 C4orf48 SH3BP2
GH04J002961 Promoter/Enhancer 2.3 EPDnew Ensembl ENCODE dbSUPER 10.5 +28.1 28131 3.3 HDGF PKNOX1 CLOCK FOXA2 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 GRK4 NOP14 FAM193A NELFA RNF4 MFSD10 HAUS3 SH3BP2 NOP14-AS1
GH04J002755 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE dbSUPER 10.3 -178.7 -178738 2.2 HDGF ATF1 ZFP64 ARID4B SIN3A DMAP1 ZNF48 YY1 GLIS2 ELK1 TNIP2 GC04P002755 FAM193A RNF4 NELFA HAUS3 MFSD10 NOP14-AS1 ZFYVE28
GH04J002866 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 11.7 -67.2 -67194 3.4 ATF1 FOXA2 ARNT ARID4B YY1 TCF12 ZNF766 GATA2 E2F8 RXRA ADD1 GRK4 TNIP2 MFSD10 NOP14-AS1 NOP14 GC04P002843 GC04P002844 GC04P002845 PIR46708
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NOP14-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NOP14-AS1 Gene

Genomic Locations for NOP14-AS1 Gene
chr4:2,934,899-2,961,738
(GRCh38/hg38)
Size:
26,840 bases
Orientation:
Plus strand
chr4:2,936,626-2,963,465
(GRCh37/hg19)

Genomic View for NOP14-AS1 Gene

Genes around NOP14-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NOP14-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NOP14-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NOP14-AS1 Gene

Proteins for NOP14-AS1 Gene

Post-translational modifications for NOP14-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NOP14-AS1 Gene

Domains & Families for NOP14-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NOP14-AS1 Gene

Function for NOP14-AS1 Gene

Phenotypes From GWAS Catalog for NOP14-AS1 Gene

genes like me logo Genes that share phenotypes with NOP14-AS1: view

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NOP14-AS1 Gene

Localization for NOP14-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NOP14-AS1 Gene

Pathways & Interactions for NOP14-AS1 Gene

SuperPathways for NOP14-AS1 Gene

No Data Available

Interacting Proteins for NOP14-AS1 Gene

Gene Ontology (GO) - Biological Process for NOP14-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NOP14-AS1 Gene

Drugs & Compounds for NOP14-AS1 Gene

No Compound Related Data Available

Transcripts for NOP14-AS1 Gene

mRNA/cDNA for NOP14-AS1 Gene

(8) Additional mRNA sequences :
(7) Ensembl transcripts including schematic representations, and UCSC links where relevant :
(8) RNA Central transcripts :

Unigene Clusters for NOP14-AS1 Gene

NOP14 antisense RNA 1:
Representative Sequences:

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NOP14-AS1 Gene

No ASD Table

Relevant External Links for NOP14-AS1 Gene

GeneLoc Exon Structure for
NOP14-AS1
ECgene alternative splicing isoforms for
NOP14-AS1

Expression for NOP14-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NOP14-AS1 Gene

SOURCE GeneReport for Unigene cluster for NOP14-AS1 Gene:

Hs.398178
genes like me logo Genes that share expression patterns with NOP14-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NOP14-AS1 Gene

Orthologs for NOP14-AS1 Gene

Evolution for NOP14-AS1 Gene

ENSEMBL:
Gene Tree for NOP14-AS1 (if available)
TreeFam:
Gene Tree for NOP14-AS1 (if available)

No data available for Orthologs for NOP14-AS1 Gene

Paralogs for NOP14-AS1 Gene

No data available for Paralogs for NOP14-AS1 Gene

Variants for NOP14-AS1 Gene

Sequence variations from dbSNP and Humsavar for NOP14-AS1 Gene

SNP ID Clin Chr 04 pos Variation AA Info Type
rs1000010069 -- 2,934,039(+) G/A upstream_transcript_variant
rs10000927 -- 2,938,702(+) C/T non_coding_transcript_variant
rs10002702 -- 2,938,335(+) A/G/T intron_variant
rs1000277392 -- 2,934,782(+) G/C upstream_transcript_variant
rs1000586959 -- 2,934,300(+) G/T upstream_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for NOP14-AS1 Gene

Variant ID Type Subtype PubMed ID
esv1551216 CNV deletion 17803354
esv2726835 CNV deletion 23290073
esv2726865 CNV deletion 23290073
esv2726866 CNV deletion 23290073
esv2726867 CNV deletion 23290073
esv3599412 CNV gain 21293372
esv3599414 CNV gain 21293372
nsv461163 CNV gain 19166990
nsv474400 CNV novel sequence insertion 20440878
nsv593437 CNV gain 21841781
nsv593438 CNV gain 21841781

Additional Variant Information for NOP14-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NOP14-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NOP14-AS1 Gene

Disorders for NOP14-AS1 Gene

MalaCards: The human disease database

(1) MalaCards diseases for NOP14-AS1 Gene - From: LncRNADisease

Disorder Aliases PubMed IDs
astrocytoma
  • astrocytic tumor
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for NOP14-AS1

genes like me logo Genes that share disorders with NOP14-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NOP14-AS1 Gene

Publications for NOP14-AS1 Gene

  1. The primary structure and genomic organization of five novel transcripts located close to the Huntington's disease gene on human chromosome 4p16.3. (PMID: 9734812) Hadano S … Ikeda JE (DNA research : an international journal for rapid publication of reports on genes and genomes 1998) 2 3 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

Products for NOP14-AS1 Gene

Sources for NOP14-AS1 Gene

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