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Aliases for NOL4L-DT Gene

Subcategory (RNA class) for NOL4L-DT Gene

non-coding RNA

Quality Score for this RNA gene is

13

Aliases for NOL4L-DT Gene

  • NOL4L Divergent Transcript 2 3 5

External Ids for NOL4L-DT Gene

Summaries for NOL4L-DT Gene

GeneCards Summary for NOL4L-DT Gene

NOL4L-DT (NOL4L Divergent Transcript) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NOL4L-DT Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NOL4L-DT Gene

Genomics for NOL4L-DT Gene

GeneHancer (GH) Regulatory Elements for NOL4L-DT Gene

Promoters and enhancers for NOL4L-DT Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH20J032564 Promoter/Enhancer 1.6 EPDnew FANTOM5 ENCODE dbSUPER 600.7 +0.2 241 1.1 ZNF121 TFE3 GABPA ZBTB44 HDAC2 GABPB1 ZNF189 BCOR GATAD1 CBX1 NOL4L-DT BCL2L1 MAPRE1 PLAGL2 ENSG00000233293 NOL4L ENSG00000228156
GH20J032565 Enhancer 0.8 ENCODE dbSUPER 607 -0.8 -768 0.4 ZNF600 HDAC2 ZNF189 BCOR CBX1 PHF20 ADNP KDM1A NOL4L-DT ENSG00000233293 NOL4L
GH20J032580 Promoter/Enhancer 2.5 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 7.5 +18.1 18070 6.1 ZFX ELF3 MNT CBFA2T2 ZNF148 MLLT1 AHR SP7 TRIM24 POLR2A ENSG00000228156 NOL4L CDK5RAP1 ENSG00000233293 CBFA2T2 COMMD7 TM9SF4 NOL4L-DT C20orf203 DNMT3B
GH20J032533 Promoter/Enhancer 2.1 FANTOM5 Ensembl ENCODE dbSUPER 6.4 -25.4 -25435 11.6 ZNF652 ELF3 ZKSCAN8 MNT CBFA2T2 ZNF148 CEBPG RERE GTF2F1 AHR NOL4L-DT ENSG00000260257 ASXL1 LOC105372592 ENSG00000233293 NOL4L
GH20J032573 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 7.2 +10.0 10049 2.3 ZNF473 CBFA2T2 MLLT1 ZSCAN21 CDC5L BACH1 MAFK SP7 PRDM1 EGR1 RSL24D1P6 ASXL1 PDRG1 TM9SF4 CDK5RAP1 BAK1P1 NOL4L-DT TSPY26P ENSG00000228156 NOL4L
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NOL4L-DT on UCSC Golden Path with GeneCards custom track

Genomic Locations for NOL4L-DT Gene

Genomic Locations for NOL4L-DT Gene
chr20:32,564,992-32,608,893
(GRCh38/hg38)
Size:
43,902 bases
Orientation:
Plus strand
chr20:31,175,281-31,196,695
(GRCh37/hg19)
Size:
21,415 bases
Orientation:
Plus strand

Genomic View for NOL4L-DT Gene

Genes around NOL4L-DT on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NOL4L-DT Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NOL4L-DT Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NOL4L-DT Gene

Proteins for NOL4L-DT Gene

Post-translational modifications for NOL4L-DT Gene

No Post-translational modifications

No data available for DME Specific Peptides for NOL4L-DT Gene

Domains & Families for NOL4L-DT Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NOL4L-DT Gene

Function for NOL4L-DT Gene

Phenotypes From GWAS Catalog for NOL4L-DT Gene

Gene Ontology (GO) - Molecular Function for NOL4L-DT Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with NOL4L-DT: view

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for NOL4L-DT

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NOL4L-DT Gene

Localization for NOL4L-DT Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NOL4L-DT Gene

Pathways & Interactions for NOL4L-DT Gene

PathCards logo

SuperPathways for NOL4L-DT Gene

No Data Available

Interacting Proteins for NOL4L-DT Gene

Gene Ontology (GO) - Biological Process for NOL4L-DT Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NOL4L-DT Gene

Drugs & Compounds for NOL4L-DT Gene

No Compound Related Data Available

Transcripts for NOL4L-DT Gene

mRNA/cDNA for NOL4L-DT Gene

(1) REFSEQ mRNAs :
(3) Additional mRNA sequences :
(1) Selected AceView cDNA sequences:
(2) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
(3) RNA Central transcripts :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for NOL4L-DT

Alternative Splicing Database (ASD) splice patterns (SP) for NOL4L-DT Gene

No ASD Table

Relevant External Links for NOL4L-DT Gene

GeneLoc Exon Structure for
NOL4L-DT
ECgene alternative splicing isoforms for
NOL4L-DT

Expression for NOL4L-DT Gene

No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NOL4L-DT Gene

Orthologs for NOL4L-DT Gene

This gene was present in the common ancestor of human and chimp.

Orthologs for NOL4L-DT Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia -- 35
  • 99 (a)
OneToOne
Species where no ortholog for NOL4L-DT was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • chicken (Gallus gallus)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • cow (Bos Taurus)
  • dog (Canis familiaris)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • fruit fly (Drosophila melanogaster)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • lizard (Anolis carolinensis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • mouse (Mus musculus)
  • oppossum (Monodelphis domestica)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rat (Rattus norvegicus)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • tropical clawed frog (Silurana tropicalis)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)
  • zebrafish (Danio rerio)

Evolution for NOL4L-DT Gene

ENSEMBL:
Gene Tree for NOL4L-DT (if available)
TreeFam:
Gene Tree for NOL4L-DT (if available)

Paralogs for NOL4L-DT Gene

No data available for Paralogs for NOL4L-DT Gene

Variants for NOL4L-DT Gene

Sequence variations from dbSNP and Humsavar for NOL4L-DT Gene

SNP ID Clin Chr 20 pos Variation AA Info Type
rs1000079813 -- 32,587,831(+) T/G intron_variant
rs1000368939 -- 32,593,075(+) T/C/G intron_variant
rs1000700565 -- 32,591,791(+) C/T intron_variant
rs1000748687 -- 32,586,291(+) A/C/T upstream_transcript_variant
rs1000900608 -- 32,605,972(+) G/A intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NOL4L-DT Gene

Variant ID Type Subtype PubMed ID
esv2722343 CNV deletion 23290073
nsv1056411 CNV loss 25217958
nsv470547 CNV loss 18288195
nsv509766 CNV insertion 20534489
nsv516018 CNV loss 19592680
nsv521347 CNV gain 19592680
nsv523511 CNV loss 19592680

Additional Variant Information for NOL4L-DT Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NOL4L-DT

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NOL4L-DT Gene

Disorders for NOL4L-DT Gene

Additional Disease Information for NOL4L-DT

No disorders were found for NOL4L-DT Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NOL4L-DT Gene

Publications for NOL4L-DT Gene

  1. A proteome-scale map of the human interactome network. (PMID: 25416956) Rolland T … Vidal M (Cell 2014) 3 58
  2. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for NOL4L-DT Gene

Products for NOL4L-DT Gene

Sources for NOL4L-DT Gene

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