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Aliases for NOC2LP2 Gene

Aliases for NOC2LP2 Gene

  • NOC2 Like Nucleolar Associated Transcriptional Repressor Pseudogene 2 2 3 5
  • NOC2-Like Nucleolar Associated Transcriptional Repressor Pseudogene 3
  • Nucleolar Complex Associated 2 Homolog Pseudogene 3

External Ids for NOC2LP2 Gene

Previous GeneCards Identifiers for NOC2LP2 Gene

  • GC02M131445

Summaries for NOC2LP2 Gene

GeneCards Summary for NOC2LP2 Gene

NOC2LP2 (NOC2 Like Nucleolar Associated Transcriptional Repressor Pseudogene 2) is a Pseudogene.

Additional gene information for NOC2LP2 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NOC2LP2 Gene

Genomics for NOC2LP2 Gene

GeneHancer (GH) Regulatory Elements for NOC2LP2 Gene

Promoters and enhancers for NOC2LP2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH02J131458 Enhancer 0.3 Ensembl 0.4 -13.4 -13407 0.2 ZNF146 LOC150776 RHOQP2 NOC2LP2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NOC2LP2 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NOC2LP2 Gene

Genomic Locations for NOC2LP2 Gene
chr2:131,442,161-131,444,894
(GRCh38/hg38)
Size:
2,734 bases
Orientation:
Minus strand
chr2:132,199,734-132,202,467
(GRCh37/hg19)
Size:
2,734 bases
Orientation:
Minus strand

Genomic View for NOC2LP2 Gene

Genes around NOC2LP2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NOC2LP2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NOC2LP2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NOC2LP2 Gene

Function for NOC2LP2 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NOC2LP2 Gene

Localization for NOC2LP2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NOC2LP2 Gene

Pathways & Interactions for NOC2LP2 Gene

PathCards logo

SuperPathways for NOC2LP2 Gene

No Data Available

Interacting Proteins for NOC2LP2 Gene

Gene Ontology (GO) - Biological Process for NOC2LP2 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NOC2LP2 Gene

Drugs & Compounds for NOC2LP2 Gene

No Compound Related Data Available

Transcripts for NOC2LP2 Gene

mRNA/cDNA for NOC2LP2 Gene

(2) Additional mRNA sequences :
(4) Selected AceView cDNA sequences:
(1) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NOC2LP2 Gene

No ASD Table

Relevant External Links for NOC2LP2 Gene

GeneLoc Exon Structure for
NOC2LP2
ECgene alternative splicing isoforms for
NOC2LP2

Expression for NOC2LP2 Gene

NURSA nuclear receptor signaling pathways regulating expression of NOC2LP2 Gene:

NOC2LP2
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NOC2LP2 Gene

Orthologs for NOC2LP2 Gene

Evolution for NOC2LP2 Gene

ENSEMBL:
Gene Tree for NOC2LP2 (if available)
TreeFam:
Gene Tree for NOC2LP2 (if available)

No data available for Orthologs for NOC2LP2 Gene

Paralogs for NOC2LP2 Gene

No data available for Paralogs for NOC2LP2 Gene

Variants for NOC2LP2 Gene

Sequence variations from dbSNP and Humsavar for NOC2LP2 Gene

SNP ID Clin Chr 02 pos Variation AA Info Type
rs1001577318 -- 131,444,950(-) T/C upstream_transcript_variant
rs1002289427 -- 131,446,738(-) T/C upstream_transcript_variant
rs1003715604 -- 131,444,266(-) G/C non_coding_transcript_variant
rs1004306849 -- 131,444,545(-) G/A non_coding_transcript_variant
rs1005612322 -- 131,442,251(-) T/A/G non_coding_transcript_variant

Structural Variations from Database of Genomic Variants (DGV) for NOC2LP2 Gene

Variant ID Type Subtype PubMed ID
dgv4075n100 CNV gain 25217958
dgv4077n100 CNV gain 25217958
dgv4078n100 CNV gain 25217958
dgv4079n100 CNV loss 25217958
dgv4080n100 CNV gain 25217958
dgv476n27 CNV loss 19166990
esv2670824 CNV deletion 23128226
esv2759092 CNV gain+loss 17122850
esv2760576 CNV gain+loss 21179565
esv34412 CNV gain 17911159
esv34704 CNV gain 17911159
esv3575300 CNV gain 25503493
esv3584079 CNV loss 25503493
esv3893359 CNV gain+loss 25118596
nsv1002963 CNV gain 25217958
nsv1004646 CNV loss 25217958
nsv1006738 CNV gain 25217958
nsv1014682 CNV loss 25217958
nsv428404 CNV loss 18775914
nsv438370 CNV loss 16468122
nsv459396 CNV gain 19166990
nsv470486 CNV loss 18288195
nsv520930 CNV gain 19592680
nsv524021 CNV loss 19592680
nsv583140 CNV gain 21841781
nsv583142 CNV loss 21841781
nsv583143 CNV gain+loss 21841781
nsv583145 CNV loss 21841781
nsv7327 OTHER inversion 18451855
nsv818082 CNV gain 17921354
nsv834376 CNV gain 17160897
nsv979123 CNV duplication 23825009
nsv997248 CNV loss 25217958

Additional Variant Information for NOC2LP2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NOC2LP2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NOC2LP2 Gene

Disorders for NOC2LP2 Gene

Additional Disease Information for NOC2LP2

No disorders were found for NOC2LP2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NOC2LP2 Gene

Publications for NOC2LP2 Gene

  1. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 58

No data available for External Links for NOC2LP2 Gene

Products for NOC2LP2 Gene

Sources for NOC2LP2 Gene

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