Aliases for NNT-AS1 Gene

Subcategory (RNA class) for NNT-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for NNT-AS1 Gene

  • NNT Antisense RNA 1 2 3 5
  • NNT-AS1 2 168
  • RP11-159F24.1 3
  • HSALNG0041522 167
  • NONHSAG040320 92

External Ids for NNT-AS1 Gene

Summaries for NNT-AS1 Gene

GeneCards Summary for NNT-AS1 Gene

NNT-AS1 (NNT Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with NNT-AS1 include Osteogenic Sarcoma and Cervical Cancer.

Additional gene information for NNT-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NNT-AS1 Gene

Genomics for NNT-AS1 Gene

GeneHancer (GH) Regulatory Elements for NNT-AS1 Gene

Promoters and enhancers for NNT-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05J043601 Promoter/Enhancer 2.2 EPDnew Ensembl ENCODE CraniofacialAtlas 514.7 +1.0 1032 3.8 HNRNPK USF1 GTF2E2 ZFX ZIC2 POLR2A ZBTB10 ZBTB11 AFF1 ZBTB26 NNT-AS1 NNT CCL28
GH05J043553 Promoter/Enhancer 2 EPDnew Ensembl ENCODE CraniofacialAtlas 12.2 +47.9 47854 4.6 HNRNPK ZBTB40 EP300 CTCF SIN3A TCF12 NRF1 MYC USF1 POLR2G RF00017-4605 PAIP1 EEF1A1P19 NNT ZNF131 RPL29P12 FGF10-AS1 C5orf34 ENSG00000249492 ENSG00000215068
GH05J043631 Enhancer 1 Ensembl ENCODE dbSUPER 23.9 -27.4 -27375 0.9 CTCF NRF1 MYC REST RAD21 TRIM22 SMC3 MXI1 SMARCC1 MAX NNT-AS1 NNT piR-53338-108 piR-54764-510
GH05J043635 Enhancer 0.8 Ensembl ENCODE dbSUPER 25.1 -31.2 -31200 2.7 CEBPG CEBPB HLF ZNF449 RXRA SP1 NNT-AS1 NNT piR-53338-108 piR-54764-510
GH05J043572 Enhancer 0.7 Ensembl 25.7 +31.4 31353 0.8 KLF7 OSR2 GATA3 ZNF335 IKZF3 ZNF843 HIC1 PRDM6 FEZF1 ZNF34 lnc-NNT-5 NNT-AS1 NNT piR-56759-453
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NNT-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NNT-AS1 Gene

Genomic Locations for NNT-AS1 Gene
chr5:43,571,321-43,603,954
(GRCh38/hg38)
Size:
32,634 bases
Orientation:
Minus strand
chr5:43,571,696-43,603,770
(GRCh37/hg19)
Size:
32,075 bases
Orientation:
Minus strand

Genomic View for NNT-AS1 Gene

Genes around NNT-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NNT-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NNT-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NNT-AS1 Gene

Proteins for NNT-AS1 Gene

Post-translational modifications for NNT-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NNT-AS1 Gene

Domains & Families for NNT-AS1 Gene

Gene Families for NNT-AS1 Gene

genes like me logo Genes that share domains with NNT-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NNT-AS1 Gene

Function for NNT-AS1 Gene

Phenotypes From GWAS Catalog for NNT-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NNT-AS1 Gene

Localization for NNT-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NNT-AS1 gene
Compartment Confidence
cytoskeleton 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NNT-AS1 Gene

Pathways & Interactions for NNT-AS1 Gene

PathCards logo

SuperPathways for NNT-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for NNT-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NNT-AS1 Gene

Drugs & Compounds for NNT-AS1 Gene

No Compound Related Data Available

Transcripts for NNT-AS1 Gene

mRNA/cDNA for NNT-AS1 Gene

26 RNACentral transcripts :
1 REFSEQ mRNAs :
6 NCBI additional mRNA sequence :
8 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
7 NONCODE transcripts :
8 LncBook transcripts :
20 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for NNT-AS1 Gene

No ASD Table

Relevant External Links for NNT-AS1 Gene

GeneLoc Exon Structure for
NNT-AS1

Expression for NNT-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NNT-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NNT-AS1

genes like me logo Genes that share expression patterns with NNT-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NNT-AS1 Gene

Orthologs for NNT-AS1 Gene

Evolution for NNT-AS1 Gene

ENSEMBL:
Gene Tree for NNT-AS1 (if available)
TreeFam:
Gene Tree for NNT-AS1 (if available)

No data available for Orthologs for NNT-AS1 Gene

Paralogs for NNT-AS1 Gene

No data available for Paralogs for NNT-AS1 Gene

Variants for NNT-AS1 Gene

Additional dbSNP identifiers (rs#s) for NNT-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for NNT-AS1 Gene

Variant ID Type Subtype PubMed ID
esv2671038 CNV deletion 23128226
esv3604904 CNV gain 21293372
esv3604909 CNV loss 21293372
nsv830275 CNV gain 17160897
nsv980640 CNV duplication 23825009

Additional Variant Information for NNT-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NNT-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for NNT-AS1 Gene

Disorders for NNT-AS1 Gene

MalaCards: The human disease database

(6) MalaCards diseases for NNT-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
osteogenic sarcoma
  • osteosarcoma; osrc
cervical cancer
  • cervical cancer, somatic
breast cancer
  • breast cancer, familial
ovarian cancer
  • ovarian cancer, somatic
colorectal cancer
  • crc
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for NNT-AS1

genes like me logo Genes that share disorders with NNT-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NNT-AS1 Gene

Publications for NNT-AS1 Gene

  1. Highly expressed long non-coding RNA NNT-AS1 promotes cell proliferation and invasion through Wnt/β-catenin signaling pathway in cervical cancer. (PMID: 28628975) Hua F … Yang J (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2017) 2 3 54
  2. Upregulated NNT-AS1, a long noncoding RNA, contributes to proliferation and migration of colorectal cancer cells in vitro and in vivo. (PMID: 27966450) Wang Q … Feng G (Oncotarget 2017) 2 3 54
  3. Long non-coding RNA NNT-AS1 sponges miR-424/E2F1 to promote the tumorigenesis and cell cycle progression of gastric cancer. (PMID: 30006956) Chen B … Chen XB (Journal of cellular and molecular medicine 2018) 3 54
  4. Overexpression of Long Non-Coding RNA NNT-AS1 Correlates with Tumor Progression and Poor Prognosis in Osteosarcoma. (PMID: 29518771) Ye H … Lu H (Cellular physiology and biochemistry : international journal of experimental cellular physiology, biochemistry, and pharmacology 2018) 3 54
  5. Long non-coding RNA NNT-AS1 affects progression of breast cancer through miR-142-3p/ZEB1 axis. (PMID: 29710510) Li Y … Zhuang M (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2018) 3 54

Products for NNT-AS1 Gene

Sources for NNT-AS1 Gene