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Aliases for NNT-AS1 Gene

Subcategory (RNA class) for NNT-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NNT-AS1 Gene

  • NNT Antisense RNA 1 2 3 5

External Ids for NNT-AS1 Gene

Summaries for NNT-AS1 Gene

GeneCards Summary for NNT-AS1 Gene

NNT-AS1 (NNT Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NNT-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NNT-AS1 Gene

Genomics for NNT-AS1 Gene

GeneHancer (GH) Regulatory Elements for NNT-AS1 Gene

Promoters and enhancers for NNT-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH05I043601 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 564.8 +0.2 202 3.6 HDGF PKNOX1 CLOCK SMAD1 ARNT ARID4B SIN3A ZNF2 YY1 ZNF766 NNT-AS1 NNT RPL29P12 TMEM267 ZNF131 EEF1A1P19 ANXA2R ENSG00000272382 CCL28
GH05I043554 Promoter/Enhancer 2 EPDnew Ensembl ENCODE 12.1 +46.9 46856 3.2 SMAD1 ARNT ARID4B SIN3A DMAP1 ZNF2 ZNF143 SP3 REST SMARCB1 PAIP1 NNT C5orf34 ENSG00000249492 ENSG00000248240 EEF1A1P19 NNT-AS1 RPL29P12 FGF10-AS1 LOC153684
GH05I043771 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 12.3 -169.9 -169913 2.7 ATF1 ARNT ZNF766 FOS ATF7 CAVIN1 ZNF518A ZNF592 MEF2D ATF4 TMEM267 NNT-AS1 ZNF131 FGF10-AS1 NNT ENSG00000249276 RPL29P12
GH05I043631 Enhancer 1.1 Ensembl ENCODE dbSUPER 11.6 -28.2 -28155 0.4 HDGF CTCF PKNOX1 MAX SIN3A RAD21 RFX5 YY1 POLR2A ZNF143 NNT NNT-AS1 GC05M043668
GH05I043635 Enhancer 0.5 ENCODE dbSUPER 25.1 -32.5 -32489 0.9 RXRA NNT-AS1 NNT GC05M043668
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NNT-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NNT-AS1 Gene

Genomic Locations for NNT-AS1 Gene
chr5:43,571,594-43,603,230
(GRCh38/hg38)
Size:
31,637 bases
Orientation:
Minus strand
chr5:43,571,696-43,603,770
(GRCh37/hg19)

Genomic View for NNT-AS1 Gene

Genes around NNT-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NNT-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NNT-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NNT-AS1 Gene

Proteins for NNT-AS1 Gene

Post-translational modifications for NNT-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NNT-AS1 Gene

Domains & Families for NNT-AS1 Gene

Gene Families for NNT-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NNT-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NNT-AS1 Gene

Function for NNT-AS1 Gene

Phenotypes From GWAS Catalog for NNT-AS1 Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NNT-AS1 Gene

Localization for NNT-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NNT-AS1 Gene

Pathways & Interactions for NNT-AS1 Gene

SuperPathways for NNT-AS1 Gene

No Data Available

Interacting Proteins for NNT-AS1 Gene

Gene Ontology (GO) - Biological Process for NNT-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NNT-AS1 Gene

Drugs & Compounds for NNT-AS1 Gene

No Compound Related Data Available

Transcripts for NNT-AS1 Gene

mRNA/cDNA for NNT-AS1 Gene

(6) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NNT-AS1 Gene

No ASD Table

Relevant External Links for NNT-AS1 Gene

GeneLoc Exon Structure for
NNT-AS1
ECgene alternative splicing isoforms for
NNT-AS1

Expression for NNT-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NNT-AS1 Gene

genes like me logo Genes that share expression patterns with NNT-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NNT-AS1 Gene

Orthologs for NNT-AS1 Gene

Evolution for NNT-AS1 Gene

ENSEMBL:
Gene Tree for NNT-AS1 (if available)
TreeFam:
Gene Tree for NNT-AS1 (if available)

No data available for Orthologs for NNT-AS1 Gene

Paralogs for NNT-AS1 Gene

No data available for Paralogs for NNT-AS1 Gene

Variants for NNT-AS1 Gene

Sequence variations from dbSNP and Humsavar for NNT-AS1 Gene

SNP ID Clin Chr 05 pos Variation AA Info Type
rs1000002629 -- 43,577,910(-) C/G intron_variant
rs1000016069 -- 43,580,150(-) C/G intron_variant
rs1000056445 -- 43,577,533(-) C/T intron_variant
rs1000169417 -- 43,572,989(-) A/G downstream_transcript_variant
rs1000172541 -- 43,595,268(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NNT-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv980640 CNV duplication 23825009
nsv830275 CNV gain 17160897
esv3604909 CNV loss 21293372
esv3604904 CNV gain 21293372
esv2671038 CNV deletion 23128226

Additional Variant Information for NNT-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NNT-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NNT-AS1 Gene

Disorders for NNT-AS1 Gene

Additional Disease Information for NNT-AS1

No disorders were found for NNT-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NNT-AS1 Gene

Publications for NNT-AS1 Gene

  1. Highly expressed long non-coding RNA NNT-AS1 promotes cell proliferation and invasion through Wnt/β-catenin signaling pathway in cervical cancer. (PMID: 28628975) Hua F … Yang J (Biomedicine & pharmacotherapy = Biomedecine & pharmacotherapie 2017) 2 3 58
  2. Upregulated NNT-AS1, a long noncoding RNA, contributes to proliferation and migration of colorectal cancer cells in vitro and in vivo. (PMID: 27966450) Wang Q … Feng G (Oncotarget 2017) 2 3 58
  3. Long noncoding RNA NNT-AS1 promotes hepatocellular carcinoma progression and metastasis through miR-363/CDK6 axis. (PMID: 29179477) Lu YB … Zhang Q (Oncotarget 2017) 3 58
  4. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58
  5. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 58

Products for NNT-AS1 Gene

Sources for NNT-AS1 Gene

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