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Aliases for NMTRV-TAC1-1 Gene

Subcategory (RNA class) for NMTRV-TAC1-1 Gene

tRNA

Quality Score for this RNA gene is

15

Aliases for NMTRV-TAC1-1 Gene

  • Nuclear-Encoded Mitochondrial TRNA-Val (TAC) 1-1 2 3
  • Nuclear-Encoded Mitochondrial Transfer RNA-Val (TAC) 1-1 2 3
  • Transfer RNA Valine 37 (Anticodon UAC) Pseudogene 2 3
  • Nmt-TRNA-Val-TAC-1-1 3
  • TRNAV37P 3

External Ids for NMTRV-TAC1-1 Gene

ORGUL Members for NMTRV-TAC1-1 Gene

Previous HGNC Symbols for NMTRV-TAC1-1 Gene

  • TRNAV37P

Summaries for NMTRV-TAC1-1 Gene

GeneCards Summary for NMTRV-TAC1-1 Gene

NMTRV-TAC1-1 (Nuclear-Encoded Mitochondrial TRNA-Val (TAC) 1-1) is an RNA Gene, and is affiliated with the tRNA class.

fRNAdb sequence ontologies for NMTRV-TAC1-1 Gene

  • tRNA: Transfer RNA (tRNA) molecules are approximately 80 nucleotides in length. Their secondary structure includes four short double-helical elements and three loops (D, anti-codon, and T loops). Further hydrogen bonds mediate the characteristic L-shaped molecular structure. tRNAs have two regions of fundamental functional importance: the anti-codon, which is responsible for specific mRNA codon recognition, and the 3' end, to which the tRNAs corresponding amino acid is attached (by aminoacyl-tRNA synthetases). tRNAs cope with the degeneracy of the genetic code in two manners: having more than one tRNA (with a specific anti-codon) for a particular amino acid; and 'wobble' base-pairing, i.e. permitting non-standard base-pairing at the 3rd anti-codon position.

Additional gene information for NMTRV-TAC1-1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary and piRNA Summary for NMTRV-TAC1-1 Gene

Genomics for NMTRV-TAC1-1 Gene

GeneHancer (GH) Regulatory Elements for NMTRV-TAC1-1 Gene

Promoters and enhancers for NMTRV-TAC1-1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH06J156557 Enhancer 0.8 ENCODE 0.4 -9.7 -9685 0.6 HDGF SP1 SP7 MZF1 ZNF600 PRDM10 ZIC2 ZNF629 ZNF341 ZNF561 ARID1B NMTRV-TAC1-1 ENSG00000220347
GH06J156564 Enhancer 0.8 ENCODE 0.4 -16.6 -16566 0.2 CC2D1A CTCF AHR MLLT1 RAD21 KAT8 GLIS2 ZBTB33 ZBTB8A ZIC2 ARID1B SNORD28B NMTRV-TAC1-1 ENSG00000220347
GH06J156616 Enhancer 1 Ensembl ENCODE 0.2 -71.0 -71023 4.2 ZNF121 NFIB MZF1 GLIS2 IKZF1 ZBTB8A ZNF600 PRDM10 ZIC2 ZEB2 SNORD28B ENSG00000220347 NMTRV-TAC1-1
GH06J156515 Enhancer 0.5 Ensembl 0.3 +32.4 32385 0.8 MAFK ZNF316 MAFG MAFF EMSY GC06P156501 NMTRV-TAC1-1
GH06J156538 Enhancer 0.3 Ensembl 0.4 +9.1 9085 1 RFX1 NMTRV-TAC1-1 GC06P156501
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NMTRV-TAC1-1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NMTRV-TAC1-1 Gene

Genomic Locations for NMTRV-TAC1-1 Gene
chr6:156,547,912-156,547,986
(GRCh38/hg38)
Size:
75 bases
Orientation:
Minus strand
chr6:156,869,046-156,869,120
(GRCh37/hg19)
Size:
75 bases
Orientation:
Minus strand

Genomic View for NMTRV-TAC1-1 Gene

Genes around NMTRV-TAC1-1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NMTRV-TAC1-1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NMTRV-TAC1-1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NMTRV-TAC1-1 Gene

ORGUL Member Location for NMTRV-TAC1-1 Gene

ORGUL Member Location for NMTRV-TAC1-1 gene

Proteins for NMTRV-TAC1-1 Gene

Post-translational modifications for NMTRV-TAC1-1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NMTRV-TAC1-1 Gene

Domains & Families for NMTRV-TAC1-1 Gene

Gene Families for NMTRV-TAC1-1 Gene

Graphical View of Domain Structure for InterPro Entry

genes like me logo Genes that share domains with NMTRV-TAC1-1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NMTRV-TAC1-1 Gene

Function for NMTRV-TAC1-1 Gene

Phenotypes From GWAS Catalog for NMTRV-TAC1-1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NMTRV-TAC1-1 Gene

Localization for NMTRV-TAC1-1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NMTRV-TAC1-1 Gene

Pathways & Interactions for NMTRV-TAC1-1 Gene

PathCards logo

SuperPathways for NMTRV-TAC1-1 Gene

No Data Available

Interacting Proteins for NMTRV-TAC1-1 Gene

Gene Ontology (GO) - Biological Process for NMTRV-TAC1-1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NMTRV-TAC1-1 Gene

Drugs & Compounds for NMTRV-TAC1-1 Gene

No Compound Related Data Available

Transcripts for NMTRV-TAC1-1 Gene

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for NMTRV-TAC1-1 Gene

No ASD Table

Relevant External Links for NMTRV-TAC1-1 Gene

GeneLoc Exon Structure for
NMTRV-TAC1-1
ECgene alternative splicing isoforms for
NMTRV-TAC1-1

No data available for mRNA/cDNA for NMTRV-TAC1-1 Gene

Expression for NMTRV-TAC1-1 Gene

No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NMTRV-TAC1-1 Gene

Orthologs for NMTRV-TAC1-1 Gene

No data available for Orthologs and Evolution for NMTRV-TAC1-1 Gene

Paralogs for NMTRV-TAC1-1 Gene

No data available for Paralogs for NMTRV-TAC1-1 Gene

Variants for NMTRV-TAC1-1 Gene

Additional Variant Information for NMTRV-TAC1-1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NMTRV-TAC1-1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations from dbSNP and Humsavar , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NMTRV-TAC1-1 Gene

Disorders for NMTRV-TAC1-1 Gene

No disorders were found for NMTRV-TAC1-1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NMTRV-TAC1-1 Gene

Publications for NMTRV-TAC1-1 Gene

  1. GtRNAdb: a database of transfer RNA genes detected in genomic sequence. (PMID: 18984615) Chan PP … Lowe TM (Nucleic acids research 2009) 3 58
  2. tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence. (PMID: 9023104) Lowe TM … Eddy SR (Nucleic acids research 1997) 1
  3. The tertiary structure of tRNA and the development of the genetic code. (PMID: 8256282) Hou YM (Trends in biochemical sciences 1993) 1

No data available for External Links for NMTRV-TAC1-1 Gene

Products for NMTRV-TAC1-1 Gene

Sources for NMTRV-TAC1-1 Gene

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