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Aliases for NMRAL2P Gene

Aliases for NMRAL2P Gene

  • NmrA Like Redox Sensor 2, Pseudogene 2 3 5
  • NmrA Like Redox Sensor 1 Pseudogene 1 2 3
  • NmrA-Like Family Domain Containing 1 Pseudogene 3
  • NMRAL1P1 3

External Ids for NMRAL2P Gene

Previous HGNC Symbols for NMRAL2P Gene

  • NMRAL1P1

Summaries for NMRAL2P Gene

GeneCards Summary for NMRAL2P Gene

NMRAL2P (NmrA Like Redox Sensor 2, Pseudogene) is a Pseudogene.

Additional gene information for NMRAL2P Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NMRAL2P Gene

Genomics for NMRAL2P Gene

GeneHancer (GH) Regulatory Elements for NMRAL2P Gene

Promoters and enhancers for NMRAL2P Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03J185958 Promoter/Enhancer 1.7 Ensembl ENCODE dbSUPER 609.4 +0.2 208 3.3 ZNF652 ELF3 CEBPG RERE MAFK SP7 PPARG PRDM1 ZNF644 KAT8 NMRAL2P TRA2B ETV5 ETV5-AS1 AHSG GC03M185982
GH03J185931 Promoter/Enhancer 2.7 UCNEbase EPDnew Ensembl ENCODE dbSUPER 4.5 -24.9 -24884 7.3 CC2D1A ZFX ELF3 MNT ZNF148 NKRF POLR2A MLLT1 CEBPG RERE TRA2B TBCCD1 RFC4 SNORA63B SNORA4 NMRAL2P IGF2BP2
GH03J186882 Enhancer 1.1 Ensembl ENCODE 6 +922.2 922158 4.6 GTF2F1 TRIM24 PRDM1 ZNF384 EGR1 SMARCA4 POLR2A DPF2 IKZF1 RFX1 ADIPOQ NMRAL2P RPS20P14 ADIPOQ-AS1
GH03J185962 Promoter 0.6 Ensembl 5.8 +2.5 2458 0.8 ZSCAN5C TRA2B ETV5 ETV5-AS1 NMRAL2P GC03M185982
GH03J185941 Enhancer 0.8 Ensembl ENCODE 4.5 -19.0 -18982 1.1 CREB1 CTBP1 DPF2 CUX1 GATA3 FOXA1 JUND FOS TCF7L2 SMARCE1 NMRAL2P TRA2B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NMRAL2P on UCSC Golden Path with GeneCards custom track

Genomic Locations for NMRAL2P Gene

Genomic Locations for NMRAL2P Gene
chr3:185,959,943-185,980,877
(GRCh38/hg38)
Size:
20,935 bases
Orientation:
Plus strand
chr3:185,677,732-185,698,666
(GRCh37/hg19)
Size:
20,935 bases
Orientation:
Plus strand

Genomic View for NMRAL2P Gene

Genes around NMRAL2P on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NMRAL2P Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NMRAL2P Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NMRAL2P Gene

Proteins for NMRAL2P Gene

Post-translational modifications for NMRAL2P Gene

No Post-translational modifications

No data available for DME Specific Peptides for NMRAL2P Gene

Domains & Families for NMRAL2P Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NMRAL2P Gene

Function for NMRAL2P Gene

Phenotypes From GWAS Catalog for NMRAL2P Gene

Animal Model Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NMRAL2P Gene

Localization for NMRAL2P Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NMRAL2P Gene

Pathways & Interactions for NMRAL2P Gene

PathCards logo

SuperPathways for NMRAL2P Gene

No Data Available

Interacting Proteins for NMRAL2P Gene

Gene Ontology (GO) - Biological Process for NMRAL2P Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NMRAL2P Gene

Drugs & Compounds for NMRAL2P Gene

No Compound Related Data Available

Transcripts for NMRAL2P Gene

mRNA/cDNA for NMRAL2P Gene

(5) Additional mRNA sequences :
(13) Selected AceView cDNA sequences:
(7) Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

Alternative Splicing Database (ASD) splice patterns (SP) for NMRAL2P Gene

No ASD Table

Relevant External Links for NMRAL2P Gene

GeneLoc Exon Structure for
NMRAL2P
ECgene alternative splicing isoforms for
NMRAL2P

Expression for NMRAL2P Gene

NURSA nuclear receptor signaling pathways regulating expression of NMRAL2P Gene:

NMRAL2P
No Expression Related Data Available

Primer Products

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NMRAL2P Gene

Orthologs for NMRAL2P Gene

Evolution for NMRAL2P Gene

ENSEMBL:
Gene Tree for NMRAL2P (if available)
TreeFam:
Gene Tree for NMRAL2P (if available)

No data available for Orthologs for NMRAL2P Gene

Paralogs for NMRAL2P Gene

No data available for Paralogs for NMRAL2P Gene

Variants for NMRAL2P Gene

Sequence variations from dbSNP and Humsavar for NMRAL2P Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000045303 -- 185,960,713(+) C/T intron_variant
rs1000291080 -- 185,966,000(+) G/A intron_variant
rs1000499886 -- 185,961,100(+) C/A/G intron_variant
rs1000508369 -- 185,967,603(+) G/A intron_variant
rs1000601382 -- 185,967,405(+) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NMRAL2P Gene

Variant ID Type Subtype PubMed ID
esv2660289 CNV deletion 23128226
esv3598980 CNV gain 21293372
nsv1142591 CNV deletion 24896259
nsv4149 CNV insertion 18451855
nsv461035 CNV loss 19166990
nsv523839 CNV loss 19592680
nsv529015 CNV gain 19592680
nsv592705 CNV loss 21841781

Additional Variant Information for NMRAL2P Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NMRAL2P

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NMRAL2P Gene

Disorders for NMRAL2P Gene

Additional Disease Information for NMRAL2P

No disorders were found for NMRAL2P Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NMRAL2P Gene

Publications for NMRAL2P Gene

  1. The NmrA-like family domain containing 1 pseudogene Loc344887 is amplified in gallbladder cancer and promotes epithelial-mesenchymal transition. (PMID: 28245089) Wu XC … Li H (Chemical biology & drug design 2017) 2 3 58
  2. A functional pseudogene, NMRAL2P, is regulated by Nrf2 and serves as a coactivator of NQO1 in sulforaphane-treated colon cancer cells. (PMID: 27860235) Johnson GS … Dashwood RH (Molecular nutrition & food research 2017) 3 58
  3. Long non-coding RNA Loc344887 is a potential prognostic biomarker in non-small cell lung cancer. (PMID: 28975987) Wu B … He F (European review for medical and pharmacological sciences 2017) 3 58
  4. Does parental expressed emotion moderate genetic effects in ADHD? An exploration using a genome wide association scan. (PMID: 18846501) Sonuga-Barke EJ … Faraone SV (American journal of medical genetics. Part B, Neuropsychiatric genetics : the official publication of the International Society of Psychiatric Genetics 2008) 3 58
  5. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3 58

Products for NMRAL2P Gene

Sources for NMRAL2P Gene

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