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Aliases for NLGN4Y-AS1 Gene

Subcategory (RNA class) for NLGN4Y-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is

3

Aliases for NLGN4Y-AS1 Gene

  • NLGN4Y Antisense RNA 1 2 3 5
  • NLGN4Y Antisense RNA 1 (Non-Protein Coding) 2 3
  • NLGN4Y Antisense RNA (Non-Protein Coding) 2 3
  • NLGN4Y-AS 3
  • NLGN4YAS 3

External Ids for NLGN4Y-AS1 Gene

Previous HGNC Symbols for NLGN4Y-AS1 Gene

  • NLGN4YAS
  • NLGN4Y-AS

Previous GeneCards Identifiers for NLGN4Y-AS1 Gene

  • GC00U931498
  • GC0YM016906

Summaries for NLGN4Y-AS1 Gene

GeneCards Summary for NLGN4Y-AS1 Gene

NLGN4Y-AS1 (NLGN4Y Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NLGN4Y-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NLGN4Y-AS1 Gene

Genomics for NLGN4Y-AS1 Gene

GeneHancer (GH) Regulatory Elements for NLGN4Y-AS1 Gene

Promoters and enhancers for NLGN4Y-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0YI014644 Enhancer 0.2 ENCODE 0.1 +159.7 159677 0.2 GC0YP014640 NLGN4Y NLGN4Y-AS1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NLGN4Y-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NLGN4Y-AS1 Gene

Genomic Locations for NLGN4Y-AS1 Gene
chrY:14,793,642-14,804,033
(GRCh38/hg38)
Size:
10,392 bases
Orientation:
Minus strand
chrY:16,905,522-16,915,913
(GRCh37/hg19)

Genomic View for NLGN4Y-AS1 Gene

Genes around NLGN4Y-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NLGN4Y-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NLGN4Y-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NLGN4Y-AS1 Gene

Proteins for NLGN4Y-AS1 Gene

Post-translational modifications for NLGN4Y-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NLGN4Y-AS1 Gene

Domains & Families for NLGN4Y-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NLGN4Y-AS1 Gene

Function for NLGN4Y-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NLGN4Y-AS1 Gene

Localization for NLGN4Y-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NLGN4Y-AS1 Gene

Pathways & Interactions for NLGN4Y-AS1 Gene

SuperPathways for NLGN4Y-AS1 Gene

No Data Available

Interacting Proteins for NLGN4Y-AS1 Gene

Gene Ontology (GO) - Biological Process for NLGN4Y-AS1 Gene

None

No data available for Pathways by source and SIGNOR curated interactions for NLGN4Y-AS1 Gene

Drugs & Compounds for NLGN4Y-AS1 Gene

No Compound Related Data Available

Transcripts for NLGN4Y-AS1 Gene

mRNA/cDNA for NLGN4Y-AS1 Gene

(1) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NLGN4Y-AS1 Gene

No ASD Table

Relevant External Links for NLGN4Y-AS1 Gene

GeneLoc Exon Structure for
NLGN4Y-AS1
ECgene alternative splicing isoforms for
NLGN4Y-AS1

Expression for NLGN4Y-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NLGN4Y-AS1 Gene

SOURCE GeneReport for Unigene cluster for NLGN4Y-AS1 Gene:

Hs.743197
genes like me logo Genes that share expression patterns with NLGN4Y-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NLGN4Y-AS1 Gene

Orthologs for NLGN4Y-AS1 Gene

Evolution for NLGN4Y-AS1 Gene

ENSEMBL:
Gene Tree for NLGN4Y-AS1 (if available)
TreeFam:
Gene Tree for NLGN4Y-AS1 (if available)

No data available for Orthologs for NLGN4Y-AS1 Gene

Paralogs for NLGN4Y-AS1 Gene

No data available for Paralogs for NLGN4Y-AS1 Gene

Variants for NLGN4Y-AS1 Gene

Sequence variations from dbSNP and Humsavar for NLGN4Y-AS1 Gene

SNP ID Clin Chr 0Y pos Variation AA Info Type
rs1006216760 -- 14,805,202(-) A/G upstream_transcript_variant
rs1006806298 -- 14,795,930(-) T/C intron_variant
rs1009878910 -- 14,798,314(-) G/T intron_variant
rs1013883537 -- 14,804,894(-) A/C upstream_transcript_variant
rs1013956719 -- 14,803,454(-) T/C intron_variant

Additional Variant Information for NLGN4Y-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NLGN4Y-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NLGN4Y-AS1 Gene

Disorders for NLGN4Y-AS1 Gene

Additional Disease Information for NLGN4Y-AS1

No disorders were found for NLGN4Y-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NLGN4Y-AS1 Gene

Publications for NLGN4Y-AS1 Gene

  1. Transcriptome characterization elucidates signaling networks that control human ES cell growth and differentiation. (PMID: 15146197) Brandenberger R … Stanton LW (Nature biotechnology 2004) 3 58

Products for NLGN4Y-AS1 Gene

Sources for NLGN4Y-AS1 Gene

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