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Aliases for NLGN1-AS1 Gene

Subcategory (RNA class) for NLGN1-AS1 Gene

non-coding RNA

Quality Score for this RNA gene is


Aliases for NLGN1-AS1 Gene

  • NLGN1 Antisense RNA 1 2 3 5
  • NLGN1 Antisense RNA 1 (Non-Protein Coding) 2

External Ids for NLGN1-AS1 Gene

Previous GeneCards Identifiers for NLGN1-AS1 Gene

  • GC00U933777
  • GC03M173629

Summaries for NLGN1-AS1 Gene

GeneCards Summary for NLGN1-AS1 Gene

NLGN1-AS1 (NLGN1 Antisense RNA 1) is an RNA Gene, and is affiliated with the non-coding RNA class.

Additional gene information for NLGN1-AS1 Gene

No data available for Entrez Gene Summary , CIViC summary , UniProtKB/Swiss-Prot , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NLGN1-AS1 Gene

Genomics for NLGN1-AS1 Gene

GeneHancer (GH) Regulatory Elements for NLGN1-AS1 Gene

Promoters and enhancers for NLGN1-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH03I173932 Enhancer 0.6 FANTOM5 0.4 -11.9 -11921 0.4 ZNF335 JUND ZFP37 FOS NLGN1-AS1 GC03P174040 NLGN1
GH03I173913 Enhancer 0.4 Ensembl 0.4 +7.3 7295 0.2 MEIS2 GATA3 NLGN1-AS1 LOC105374225 NLGN1
GH03I173865 Enhancer 0.4 ENCODE 0.2 +54.6 54599 0.9 ATF7 ATF2 NLGN1-AS1 LOC105374225 NLGN1
GH03I173744 Enhancer 0.6 FANTOM5 dbSUPER 0.1 +176.1 176088 0.3 JUN LOC105374225 GC03P173698 NLGN1-AS1 NLGN1
GH03I173749 Enhancer 0.6 dbSUPER 0.1 +170.3 170341 1.7 JUN CEBPG ZEB2 EP300 ZNF843 ATF2 PRDM6 ZNF366 ZNF692 ZNF629 LOC105374225 GC03P173698 NLGN1-AS1 NLGN1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data dump

GeneHancers around NLGN1-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NLGN1-AS1 Gene

Genomic Locations for NLGN1-AS1 Gene
10,299 bases
Minus strand

Genomic View for NLGN1-AS1 Gene

Genes around NLGN1-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NLGN1-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NLGN1-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NLGN1-AS1 Gene

Proteins for NLGN1-AS1 Gene

Post-translational modifications for NLGN1-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NLGN1-AS1 Gene

Domains & Families for NLGN1-AS1 Gene

Graphical View of Domain Structure for InterPro Entry

No data available for Gene Families , Protein Domains , Suggested Antigen Peptide Sequences and UniProtKB/Swiss-Prot for NLGN1-AS1 Gene

Function for NLGN1-AS1 Gene

Animal Model Products

Clone Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Phenotypes From GWAS Catalog , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NLGN1-AS1 Gene

Localization for NLGN1-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NLGN1-AS1 Gene

Pathways & Interactions for NLGN1-AS1 Gene

SuperPathways for NLGN1-AS1 Gene

No Data Available

Interacting Proteins for NLGN1-AS1 Gene

Gene Ontology (GO) - Biological Process for NLGN1-AS1 Gene


No data available for Pathways by source and SIGNOR curated interactions for NLGN1-AS1 Gene

Drugs & Compounds for NLGN1-AS1 Gene

No Compound Related Data Available

Transcripts for NLGN1-AS1 Gene

mRNA/cDNA for NLGN1-AS1 Gene

(2) Ensembl transcripts including schematic representations, and UCSC links where relevant :

Clone Products

Alternative Splicing Database (ASD) splice patterns (SP) for NLGN1-AS1 Gene

No ASD Table

Relevant External Links for NLGN1-AS1 Gene

GeneLoc Exon Structure for
ECgene alternative splicing isoforms for

Expression for NLGN1-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NLGN1-AS1 Gene

mRNA differential expression in normal tissues according to GTEx for NLGN1-AS1 Gene

This gene is overexpressed in Testis (x39.2) and Brain - Cerebellum (x7.5).
genes like me logo Genes that share expression patterns with NLGN1-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NLGN1-AS1 Gene

Orthologs for NLGN1-AS1 Gene

Evolution for NLGN1-AS1 Gene

Gene Tree for NLGN1-AS1 (if available)
Gene Tree for NLGN1-AS1 (if available)

No data available for Orthologs for NLGN1-AS1 Gene

Paralogs for NLGN1-AS1 Gene

No data available for Paralogs for NLGN1-AS1 Gene

Variants for NLGN1-AS1 Gene

Sequence variations from dbSNP and Humsavar for NLGN1-AS1 Gene

SNP ID Clin Chr 03 pos Variation AA Info Type
rs1000267666 -- 173,919,178(-) T/C intron_variant
rs1000276528 -- 173,911,716(-) G/C intron_variant
rs1000287951 -- 173,911,983(-) T/C intron_variant
rs1000563305 -- 173,913,510(-) A/C intron_variant
rs1000633189 -- 173,920,402(-) C/T intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NLGN1-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv305n21 CNV gain 19592680
dgv4987n100 CNV gain 25217958
esv3575641 CNV gain 25503493
nsv1003504 CNV gain 25217958
nsv7356 OTHER inversion 18451855

Additional Variant Information for NLGN1-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot and Variation tolerance for NLGN1-AS1 Gene

Disorders for NLGN1-AS1 Gene

Additional Disease Information for NLGN1-AS1

No disorders were found for NLGN1-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NLGN1-AS1 Gene

Publications for NLGN1-AS1 Gene

No publications were found for NLGN1-AS1 Gene.

Products for NLGN1-AS1 Gene

Sources for NLGN1-AS1 Gene

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