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Aliases for NLE1 Gene

Aliases for NLE1 Gene

  • Notchless Homolog 1 2 3 5
  • Notchless Gene Homolog, (Drosophila) 2
  • Notchless Homolog (Drosophila) 2
  • Notchless Protein Homolog 1 3
  • Notchless Gene Homolog 3
  • NLE 3

External Ids for NLE1 Gene

Previous HGNC Symbols for NLE1 Gene

  • NLE

Previous GeneCards Identifiers for NLE1 Gene

  • GC17M030472
  • GC17M033458
  • GC17M029643

Summaries for NLE1 Gene

GeneCards Summary for NLE1 Gene

NLE1 (Notchless Homolog 1) is a Protein Coding gene. An important paralog of this gene is DAW1.

UniProtKB/Swiss-Prot for NLE1 Gene

  • Plays a role in regulating Notch activity. Plays a role in regulating the expression of CDKN1A and several members of the Wnt pathway, probably via its effects on Notch activity. Required during embryogenesis for inner mass cell survival (By similarity).

Gene Wiki entry for NLE1 Gene

Additional gene information for NLE1 Gene

No data available for Entrez Gene Summary , CIViC summary , Tocris Summary , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NLE1 Gene

Genomics for NLE1 Gene

GeneHancer (GH) Regulatory Elements for NLE1 Gene

Promoters and enhancers for NLE1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH17J035140 Promoter/Enhancer 2.1 EPDnew Ensembl ENCODE 650.7 +0.4 390 2 HDGF SMAD1 MLX ARID4B SIN3A DMAP1 ZNF2 YY1 SLC30A9 POLR2B GC17M035139 GC17P035142 NLE1 LIG3 LINC02001 CCT6B RFFL
GH17J035083 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 9.8 +55.2 55152 6.6 HDGF PKNOX1 FOXA2 SMAD1 MLX ARID4B SIN3A DMAP1 IRF4 YY1 RFFL LIG3 SLFN5 ZNF830 CCT6B NLE1 RPL37P22 RAD51L3-RFFL ENSG00000267618
GH17J035212 Enhancer 1.2 FANTOM5 Ensembl ENCODE dbSUPER 21.6 -72.8 -72776 5.4 PKNOX1 ZNF133 BATF GABPA NCOA2 YY1 OSR2 PRDM6 ZNF157 CUX1 SLFN5 NLE1 SLFN12L AP2B1 LINC02001 UNC45B ZNF830 SLC35G3
GH17J035020 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 10.2 +119.6 119556 3.9 BCOR JUN MAX SIN3A ZMYM3 EBF1 ZIC2 RAD21 POLR2A FOS RFFL LIG3 RNU6-840P SLFN12L NLE1 SLFN5 ZNF830 CCT6B ENSG00000273687 GC17P035052
GH17J035172 Enhancer 0.8 Ensembl ENCODE 24.1 -29.7 -29656 0.9 CTCF ZNF654 CEBPB REST CEBPG RAD21 ATF2 MITF ATF4 JUND NLE1 SLFN5 SLFN12L GC17M035166 GC17M035176 UNC45B
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NLE1 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the NLE1 gene promoter:
  • p53
  • c-Ets-1
  • CREB
  • deltaCREB
  • SREBP-1a
  • SREBP-1b
  • SREBP-1c
  • Nkx2-5

Genomic Locations for NLE1 Gene

Genomic Locations for NLE1 Gene
chr17:35,128,753-35,142,315
(GRCh38/hg38)
Size:
13,563 bases
Orientation:
Minus strand
chr17:33,455,772-33,469,334
(GRCh37/hg19)
Size:
13,563 bases
Orientation:
Minus strand

Genomic View for NLE1 Gene

Genes around NLE1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NLE1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NLE1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NLE1 Gene

Proteins for NLE1 Gene

  • Protein details for NLE1 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NVX2-NLE1_HUMAN
    Recommended name:
    Notchless protein homolog 1
    Protein Accession:
    Q9NVX2
    Secondary Accessions:
    • O60868
    • Q59GJ8
    • Q9BU54

    Protein attributes for NLE1 Gene

    Size:
    485 amino acids
    Molecular mass:
    53320 Da
    Quaternary structure:
    • Associates with the pre-60S ribosomal particle. Interacts (via WD repeats) with uL18 (By similarity). Interacts (via UBL domain) with MDN1 (via VWFA/MIDAS domain) (PubMed:26601951).
    SequenceCaution:
    • Sequence=BAD92348.1; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

    Alternative splice isoforms for NLE1 Gene

    UniProtKB/Swiss-Prot:

neXtProt entry for NLE1 Gene

Post-translational modifications for NLE1 Gene

  • Ubiquitination at isoforms=2326 and isoforms=224
  • Modification sites at PhosphoSitePlus

Antibody Products

  • Abcam antibodies for NLE1
  • Boster Bio Antibodies for NLE1

No data available for DME Specific Peptides for NLE1 Gene

Domains & Families for NLE1 Gene

Gene Families for NLE1 Gene

HGNC:
Human Protein Atlas (HPA):
  • Predicted intracellular proteins

Suggested Antigen Peptide Sequences for NLE1 Gene

GenScript: Design optimal peptide antigens:

Graphical View of Domain Structure for InterPro Entry

Q9NVX2

UniProtKB/Swiss-Prot:

NLE1_HUMAN :
  • Belongs to the NLE1/RSA4 family.
Family:
  • Belongs to the NLE1/RSA4 family.
genes like me logo Genes that share domains with NLE1: view

Function for NLE1 Gene

Molecular function for NLE1 Gene

UniProtKB/Swiss-Prot Function:
Plays a role in regulating Notch activity. Plays a role in regulating the expression of CDKN1A and several members of the Wnt pathway, probably via its effects on Notch activity. Required during embryogenesis for inner mass cell survival (By similarity).

Phenotypes From GWAS Catalog for NLE1 Gene

Gene Ontology (GO) - Molecular Function for NLE1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IEA --
genes like me logo Genes that share ontologies with NLE1: view
genes like me logo Genes that share phenotypes with NLE1: view

Animal Models for NLE1 Gene

MGI Knock Outs for NLE1:
  • Nle1 Nle1<tm1Cba>
  • Nle1 Nle1<tm1.2Cota>

Animal Model Products

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for NLE1

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , Transcription Factor Targets and HOMER Transcription for NLE1 Gene

Localization for NLE1 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NLE1 Gene

Nucleus, nucleolus.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NLE1 gene
Compartment Confidence
nucleus 5
cytosol 3
plasma membrane 2
extracellular 2
lysosome 1

Subcellular locations from the

Human Protein Atlas (HPA)
  • Nucleoli (3)
  • Nucleus (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for NLE1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005634 nucleus IDA --
GO:0005730 nucleolus IDA --
GO:0005840 ribosome IBA --
genes like me logo Genes that share ontologies with NLE1: view

Pathways & Interactions for NLE1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NLE1 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000027 ribosomal large subunit assembly IBA --
GO:0001756 somitogenesis IEA --
GO:0001822 kidney development IEA --
GO:0001826 inner cell mass cell differentiation IEA --
GO:0007219 Notch signaling pathway IBA --
genes like me logo Genes that share ontologies with NLE1: view

No data available for Pathways by source and SIGNOR curated interactions for NLE1 Gene

Drugs & Compounds for NLE1 Gene

No Compound Related Data Available

Transcripts for NLE1 Gene

mRNA/cDNA for NLE1 Gene

Unigene Clusters for NLE1 Gene

Notchless homolog 1 (Drosophila):
Representative Sequences:

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for NLE1

Alternative Splicing Database (ASD) splice patterns (SP) for NLE1 Gene

ExUns: 1a · 1b · 1c ^ 2a · 2b ^ 3 ^ 4 ^ 5 ^ 6a · 6b · 6c ^ 7 ^ 8 ^ 9 ^ 10 ^ 11 ^ 12 ^ 13
SP1: - -
SP2:
SP3: - -
SP4:
SP5: - -

Relevant External Links for NLE1 Gene

GeneLoc Exon Structure for
NLE1
ECgene alternative splicing isoforms for
NLE1

Expression for NLE1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NLE1 Gene

mRNA differential expression in normal tissues according to GTEx for NLE1 Gene

This gene is overexpressed in Pancreas (x4.1).

Protein differential expression in normal tissues from HIPED for NLE1 Gene

This gene is overexpressed in Breast (21.0), Adipocyte (15.5), and Peripheral blood mononuclear cells (8.7).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB, MaxQB, and MOPED for NLE1 Gene



Protein tissue co-expression partners for NLE1 Gene

NURSA nuclear receptor signaling pathways regulating expression of NLE1 Gene:

NLE1

SOURCE GeneReport for Unigene cluster for NLE1 Gene:

Hs.85570

Evidence on tissue expression from TISSUES for NLE1 Gene

  • Nervous system(4.7)
  • Lung(4.3)
  • Pancreas(2.7)
  • Blood(2.2)
  • Intestine(2.2)
  • Stomach(2.2)
  • Kidney(2.1)
  • Skin(2.1)
genes like me logo Genes that share expression patterns with NLE1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA Expression by UniProt/SwissProt and Phenotype-based relationships between genes and organs from Gene ORGANizer for NLE1 Gene

Orthologs for NLE1 Gene

This gene was present in the common ancestor of eukaryotes.

Orthologs for NLE1 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NLE1 34 33
  • 99.52 (n)
OneToOne
cow
(Bos Taurus)
Mammalia NLE1 34 33
  • 91.28 (n)
OneToOne
dog
(Canis familiaris)
Mammalia NLE1 34 33
  • 91.13 (n)
OneToOne
rat
(Rattus norvegicus)
Mammalia Nle1 33
  • 89.55 (n)
mouse
(Mus musculus)
Mammalia Nle1 16 34 33
  • 89.14 (n)
oppossum
(Monodelphis domestica)
Mammalia NLE1 34
  • 84 (a)
OneToOne
chicken
(Gallus gallus)
Aves NLE1 34 33
  • 76.65 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia NLE1 34
  • 74 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia nle1 33
  • 73.32 (n)
Str.11153 33
African clawed frog
(Xenopus laevis)
Amphibia nle-pending-prov 33
zebrafish
(Danio rerio)
Actinopterygii nle1 34 33
  • 73.32 (n)
OneToOne
wufc12b09 33
African malaria mosquito
(Anopheles gambiae)
Insecta AgaP_AGAP002221 33
  • 60.82 (n)
fruit fly
(Drosophila melanogaster)
Insecta Nle 34 33
  • 59.66 (n)
OneToOne
worm
(Caenorhabditis elegans)
Secernentea W07E6.2 34 33
  • 58.21 (n)
OneToOne
A. gosspyii yeast
(Ashbya gossypii)
Saccharomycetes AGOS_AER263C 33
  • 56.15 (n)
K. lactis yeast
(Kluyveromyces lactis)
Saccharomycetes KLLA0C08547g 33
  • 52.62 (n)
baker's yeast
(Saccharomyces cerevisiae)
Saccharomycetes RSA4 34 33
  • 50.73 (n)
OneToMany
thale cress
(Arabidopsis thaliana)
eudicotyledons AT5G52820 33
  • 54.43 (n)
rice
(Oryza sativa)
Liliopsida Os10g0104500 33
  • 60.3 (n)
barley
(Hordeum vulgare)
Liliopsida Hv.6600 33
wheat
(Triticum aestivum)
Liliopsida Ta.10544 33
sea squirt
(Ciona savignyi)
Ascidiacea -- 34
  • 66 (a)
OneToOne
Cin.13874 33
bread mold
(Neurospora crassa)
Ascomycetes NCU00794 33
  • 52.4 (n)
fission yeast
(Schizosaccharomyces pombe)
Schizosaccharomycetes SPCC18.05c 33
  • 51.35 (n)
sea squirt
(Ciona intestinalis)
Ascidiacea Cin.13874 33
Species where no ortholog for NLE1 was found in the sources mined by GeneCards:
  • Actinobacteria (Mycobacterium tuberculosis)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • beta proteobacteria (Neisseria meningitidis)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • platypus (Ornithorhynchus anatinus)
  • rainbow trout (Oncorhynchus mykiss)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)

Evolution for NLE1 Gene

ENSEMBL:
Gene Tree for NLE1 (if available)
TreeFam:
Gene Tree for NLE1 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for NLE1: view image

Paralogs for NLE1 Gene

Paralogs for NLE1 Gene

(12) SIMAP similar genes for NLE1 Gene using alignment to 4 proteins:

  • NLE1_HUMAN
  • K7EK23_HUMAN
  • K7EN33_HUMAN
  • K7ERN7_HUMAN
genes like me logo Genes that share paralogs with NLE1: view

Variants for NLE1 Gene

Sequence variations from dbSNP and Humsavar for NLE1 Gene

SNP ID Clin Chr 17 pos Variation AA Info Type
rs75635495 A breast cancer sample 35,136,371(-) G/T coding_sequence_variant, missense_variant
rs1000163855 -- 35,130,645(-) G/A 3_prime_UTR_variant, genic_downstream_transcript_variant
rs1000190657 -- 35,141,190(-) A/G intron_variant
rs1000318372 -- 35,136,458(-) C/T 5_prime_UTR_variant, coding_sequence_variant, missense_variant
rs1000365527 -- 35,134,995(-) T/C intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NLE1 Gene

Variant ID Type Subtype PubMed ID
esv3306040 CNV mobile element insertion 20981092
esv3410861 CNV insertion 20981092
esv3892998 CNV loss 25118596
nsv2036 CNV insertion 18451855

Variation tolerance for NLE1 Gene

Residual Variation Intolerance Score: 43.9% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 5.43; 71.34% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for NLE1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NLE1

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NLE1 Gene

Disorders for NLE1 Gene

Additional Disease Information for NLE1

No disorders were found for NLE1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NLE1 Gene

Publications for NLE1 Gene

  1. The Crystal Structure of the Ubiquitin-like Domain of Ribosome Assembly Factor Ytm1 and Characterization of Its Interaction with the AAA-ATPase Midasin. (PMID: 26601951) Romes EM … Stanley RE (The Journal of biological chemistry 2016) 3 4 58
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 4 58
  3. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  4. Functional proteomic analysis of human nucleolus. (PMID: 12429849) Scherl A … Diaz JJ (Molecular biology of the cell 2002) 3 4 58
  5. Characterization of 16 novel human genes showing high similarity to yeast sequences. (PMID: 11124703) Stanchi F … Valle G (Yeast (Chichester, England) 2001) 3 4 58

Products for NLE1 Gene

Sources for NLE1 Gene

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