Aliases for NINJ2-AS1 Gene

Subcategory (RNA class) for NINJ2-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for NINJ2-AS1 Gene

  • NINJ2 Antisense RNA 1 2 3
  • Novel Transcript 5
  • Lnc-B4GALNT3-2 168
  • NONHSAG010146 92
  • HSALNG0088498 167
  • AC021054.1 5
  • NINJ2-AS1 2

External Ids for NINJ2-AS1 Gene

Summaries for NINJ2-AS1 Gene

GeneCards Summary for NINJ2-AS1 Gene

NINJ2-AS1 (NINJ2 Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NINJ2-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NINJ2-AS1 Gene

Genomics for NINJ2-AS1 Gene

GeneHancer (GH) Regulatory Elements for NINJ2-AS1 Gene

Promoters and enhancers for NINJ2-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J000629 Promoter/Enhancer 1.6 Ensembl ENCODE CraniofacialAtlas dbSUPER 532.1 +1.3 1279 4.4 ZBTB40 ZNF217 TCF12 JUND TEAD4 FOS POLR2A TCF7 FOXA1 TRIM28 NINJ2-AS1 NINJ2 ENSG00000256020 lnc-KDM5A-5
GH12J000628 Enhancer 0.2 dbSUPER 500.7 -1.5 -1494 0.7 NINJ2-AS1 NINJ2 lnc-B4GALNT3-6 lnc-KDM5A-5
GH12J000641 Promoter/Enhancer 2 Ensembl ENCODE CraniofacialAtlas dbSUPER 35.9 +13.8 13833 5.9 FOXK2 CTCF ZSCAN5C POLR2G USF1 SP1 NCOR1 FOS TEAD4 ZFX lnc-KDM5A-5 piR-42681 NINJ2-AS1 WNK1 ENSG00000256020 NINJ2
GH12J000615 Promoter/Enhancer 1.6 FANTOM5 Ensembl ENCODE dbSUPER 31.1 -14.0 -14046 3 KDM6A TCF7 ZBTB25 ZBTB7A SKI TEAD1 ZKSCAN8 FOXA2 ZSCAN9 KMT2B NINJ2-AS1 KDM5A WNK1 ENSG00000256020 NINJ2 CCDC77 lnc-B4GALNT3-6 lnc-KDM5A-5 LOC105369595
GH12J000569 Promoter/Enhancer 1.9 FANTOM5 ENCODE CraniofacialAtlas dbSUPER 22.7 -59.7 -59688 3.5 CTCF NRF1 TCF12 POLR2G NCOR1 PHF8 JUND FOS TEAD4 ZNF639 NINJ2-AS1 ENSG00000256020 WNK1 NINJ2 ENSG00000250132 ERC1 RAD52 lnc-B4GALNT3-4 piR-45263 lnc-KDM5A-5
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NINJ2-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NINJ2-AS1 Gene

Genomic Locations for NINJ2-AS1 Gene
chr12:630,858-664,196
(GRCh38/hg38)
Size:
33,339 bases
Orientation:
Plus strand
chr12:740,057-772,872
(GRCh37/hg19)
Size:
32,816 bases
Orientation:
Plus strand

Genomic View for NINJ2-AS1 Gene

Genes around NINJ2-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NINJ2-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NINJ2-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NINJ2-AS1 Gene

Proteins for NINJ2-AS1 Gene

Post-translational modifications for NINJ2-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NINJ2-AS1 Gene

Domains & Families for NINJ2-AS1 Gene

Suggested Antigen Peptide Sequences for NINJ2-AS1 Gene

GenScript: Design optimal peptide antigens:
  • LOC100049716 protein (Q8N503_HUMAN)

No data available for Gene Families , Protein Domains , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NINJ2-AS1 Gene

Function for NINJ2-AS1 Gene

Phenotypes From GWAS Catalog for NINJ2-AS1 Gene

Phenotypes for NINJ2-AS1 Gene

genes like me logo Genes that share phenotypes with NINJ2-AS1: view

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NINJ2-AS1 Gene

Localization for NINJ2-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NINJ2-AS1 Gene

Pathways & Interactions for NINJ2-AS1 Gene

PathCards logo

SuperPathways for NINJ2-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for NINJ2-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NINJ2-AS1 Gene

Drugs & Compounds for NINJ2-AS1 Gene

No Compound Related Data Available

Transcripts for NINJ2-AS1 Gene

mRNA/cDNA for NINJ2-AS1 Gene

18 RNACentral transcripts :
1 REFSEQ mRNAs :
4 NCBI additional mRNA sequence :
7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
7 NONCODE transcripts :
6 LncBook transcripts :
11 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for NINJ2-AS1 Gene

No ASD Table

Relevant External Links for NINJ2-AS1 Gene

GeneLoc Exon Structure for
NINJ2-AS1

Expression for NINJ2-AS1 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NINJ2-AS1

SOURCE GeneReport for Unigene cluster for NINJ2-AS1 Gene:

Hs.655804
No Expression Related Data Available

No data available for mRNA expression in normal human tissues , mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NINJ2-AS1 Gene

Orthologs for NINJ2-AS1 Gene

Evolution for NINJ2-AS1 Gene

ENSEMBL:
Gene Tree for NINJ2-AS1 (if available)
TreeFam:
Gene Tree for NINJ2-AS1 (if available)

No data available for Orthologs for NINJ2-AS1 Gene

Paralogs for NINJ2-AS1 Gene

No data available for Paralogs for NINJ2-AS1 Gene

Variants for NINJ2-AS1 Gene

Additional dbSNP identifiers (rs#s) for NINJ2-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for NINJ2-AS1 Gene

Variant ID Type Subtype PubMed ID
dgv1334n100 CNV gain 25217958
dgv2251n54 CNV gain 21841781
esv2759875 CNV gain+loss 17122850
esv29801 CNV loss 19812545
esv3892123 CNV gain 25118596
nsv1040579 CNV gain 25217958
nsv1042529 CNV gain 25217958
nsv1050781 CNV loss 25217958
nsv468951 CNV gain 19166990
nsv470254 CNV gain 18288195
nsv556885 CNV gain 21841781
nsv556887 CNV gain 21841781
nsv556893 CNV gain 21841781
nsv556894 CNV gain 21841781
nsv556895 CNV gain 21841781

Additional Variant Information for NINJ2-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NINJ2-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for NINJ2-AS1 Gene

Disorders for NINJ2-AS1 Gene

No disorders were found for NINJ2-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot , Genatlas and External Links for NINJ2-AS1 Gene

Publications for NINJ2-AS1 Gene

  1. The lacrimal gland transcriptome is an unusually rich source of rare and poorly characterized gene transcripts. (PMID: 15851553) Ozyildirim AM … Laurie GW (Investigative ophthalmology & visual science 2005) 3 54
  2. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54
  3. Generation and initial analysis of more than 15,000 full-length human and mouse cDNA sequences. (PMID: 12477932) Strausberg RL … Mammalian Gene Collection Program Team (Proceedings of the National Academy of Sciences of the United States of America 2002) 3 54

No data available for Mastermind for NINJ2-AS1 Gene

Products for NINJ2-AS1 Gene

Sources for NINJ2-AS1 Gene