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Aliases for NINJ2 Gene

Aliases for NINJ2 Gene

  • Ninjurin 2 2 3 5
  • Nerve Injury-Induced Protein 2 3 4
  • Ninjurin-2 3 4

External Ids for NINJ2 Gene

Previous GeneCards Identifiers for NINJ2 Gene

  • GC12M000526
  • GC12M000543
  • GC12M000673

Summaries for NINJ2 Gene

Entrez Gene Summary for NINJ2 Gene

  • The protein encoded by this gene belongs to the ninjurin (for nerve injury induced) family. It is a cell surface adhesion protein that is upregulated in Schwann cells surrounding the distal segment of injured nerve, and promotes neurite outgrowth, thus may have a role in nerve regeneration after nerve injury. [provided by RefSeq, Oct 2011]

GeneCards Summary for NINJ2 Gene

NINJ2 (Ninjurin 2) is a Protein Coding gene. An important paralog of this gene is NINJ1.

UniProtKB/Swiss-Prot for NINJ2 Gene

  • Homophilic cell adhesion molecule that promotes axonal growth. May play a role in nerve regeneration and in the formation and function of other tissues.

Additional gene information for NINJ2 Gene

No data available for CIViC summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , fRNAdb sequence ontologies and piRNA Summary for NINJ2 Gene

Genomics for NINJ2 Gene

GeneHancer (GH) Regulatory Elements for NINJ2 Gene

Promoters and enhancers for NINJ2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH12J000716 Promoter/Enhancer 1.9 EPDnew FANTOM5 Ensembl ENCODE dbSUPER 612.4 -52.8 -52822 2 CBFA2T2 ZNF121 TRIM24 PRDM1 SMARCA4 DPF2 ATF1 PKNOX1 LEF1 EP300 NINJ2 LINC02455 WNK1 RNU4ATAC16P B4GALNT3
GH12J000661 Promoter/Enhancer 1.8 EPDnew Ensembl ENCODE dbSUPER 605.6 +0.7 723 2.2 PKNOX1 RXRA ZSCAN4 SP1 MNT ZFP69B WT1 RAD21 THRB KDM1A NINJ2 ENSG00000177406 PIR35680 GC12P000646
GH12J000629 Promoter/Enhancer 1.6 Ensembl ENCODE dbSUPER 17.8 +31.8 31817 4.7 ELF3 CEBPG RERE POLR2A ZNF687 ZSCAN21 MAFK TFE3 ELF1 SP1 ENSG00000177406 LOC100049716 NINJ2 KDM5A ENSG00000256020 GC12P000646 PIR35680
GH12J000722 Enhancer 1.5 FANTOM5 Ensembl ENCODE dbSUPER 12.7 -63.2 -63221 9.6 SP1 CC2D1A ZNF121 ZNF687 NCOA3 RELA PRDM1 MLLT1 IKZF1 ZNF600 WNK1 NINJ2 IQSEC3 RNU4ATAC16P ENSG00000177406 LINC02455
GH12J000569 Enhancer 1.5 FANTOM5 ENCODE dbSUPER 11.9 +92.5 92483 3.2 ZNF652 ELF3 CTCF NKRF ZNF121 CEBPG ZSCAN21 AHR ZBTB7A YY1 GC12M000554 ENSG00000256020 WNK1 NINJ2 ENSG00000177406 ERC1 RAD52 ENSG00000250132 PIR38262
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NINJ2 on UCSC Golden Path with GeneCards custom track

Top Transcription factor binding sites by QIAGEN in the NINJ2 gene promoter:
  • Bach2
  • Brachyury
  • C/EBPalpha
  • FOXO1
  • FOXO3
  • FOXO3a
  • FOXO3b
  • FOXO4
  • GATA-1
  • HOXA5

Genomic Locations for NINJ2 Gene

Genomic Locations for NINJ2 Gene
chr12:564,296-663,779
(GRCh38/hg38)
Size:
99,484 bases
Orientation:
Minus strand
chr12:673,462-772,945
(GRCh37/hg19)
Size:
99,484 bases
Orientation:
Minus strand

Genomic View for NINJ2 Gene

Genes around NINJ2 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NINJ2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NINJ2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NINJ2 Gene

Proteins for NINJ2 Gene

  • Protein details for NINJ2 Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    Q9NZG7-NINJ2_HUMAN
    Recommended name:
    Ninjurin-2
    Protein Accession:
    Q9NZG7

    Protein attributes for NINJ2 Gene

    Size:
    142 amino acids
    Molecular mass:
    15680 Da
    Quaternary structure:
    No Data Available
    SequenceCaution:
    • Sequence=AAH57766.2; Type=Erroneous initiation; Note=Translation N-terminally shortened.; Evidence={ECO:0000305};

neXtProt entry for NINJ2 Gene

Post-translational modifications for NINJ2 Gene

  • Modification sites at PhosphoSitePlus
  • Modification sites at neXtProt

Other Protein References for NINJ2 Gene

No data available for DME Specific Peptides for NINJ2 Gene

Domains & Families for NINJ2 Gene

Gene Families for NINJ2 Gene

Human Protein Atlas (HPA):
  • Predicted membrane proteins

Protein Domains for NINJ2 Gene

Blocks:
InterPro:
ProtoNet:

Suggested Antigen Peptide Sequences for NINJ2 Gene

GenScript: Design optimal peptide antigens:
  • cDNA FLJ52244, weakly similar to Ninjurin-2 (B4DNS9_HUMAN)
  • Nerve injury-induced protein 2 (NINJ2_HUMAN)

Graphical View of Domain Structure for InterPro Entry

Q9NZG7

UniProtKB/Swiss-Prot:

NINJ2_HUMAN :
  • Belongs to the ninjurin family.
Family:
  • Belongs to the ninjurin family.
genes like me logo Genes that share domains with NINJ2: view

Function for NINJ2 Gene

Molecular function for NINJ2 Gene

UniProtKB/Swiss-Prot Function:
Homophilic cell adhesion molecule that promotes axonal growth. May play a role in nerve regeneration and in the formation and function of other tissues.
UniProtKB/Swiss-Prot Induction:
By nerve injury; in Schwann cells.

Phenotypes From GWAS Catalog for NINJ2 Gene

Gene Ontology (GO) - Molecular Function for NINJ2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005515 protein binding IPI 25416956
genes like me logo Genes that share ontologies with NINJ2: view
genes like me logo Genes that share phenotypes with NINJ2: view

Animal Models for NINJ2 Gene

MGI Knock Outs for NINJ2:
  • Ninj2 Ninj2<tm1a(KOMP)Wtsi>

Animal Model Products

  • Taconic Biosciences Mouse Models for NINJ2

CRISPR Products

Clone Products

  • Applied Biological Materials (abm): Clones for NINJ2 - Now 50% OFF >
  • * NINJ2 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
  • * NINJ2 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All

No data available for Enzyme Numbers (IUBMB) , Human Phenotype Ontology , miRNA , Transcription Factor Targets and HOMER Transcription for NINJ2 Gene

Localization for NINJ2 Gene

Subcellular locations from UniProtKB/Swiss-Prot for NINJ2 Gene

Membrane; Multi-pass membrane protein.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NINJ2 gene
Compartment Confidence
plasma membrane 4
cytosol 2
mitochondrion 1
peroxisome 0

Subcellular locations from the

Human Protein Atlas (HPA)
  • Endoplasmic reticulum (2)
See all subcellular structures

Gene Ontology (GO) - Cellular Components for NINJ2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005887 integral component of plasma membrane TAS 10627596
GO:0016020 membrane IEA --
GO:0016021 integral component of membrane IEA --
genes like me logo Genes that share ontologies with NINJ2: view

Pathways & Interactions for NINJ2 Gene

PathCards logo

SuperPathways for NINJ2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NINJ2 Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0007155 cell adhesion IEA --
GO:0007158 neuron cell-cell adhesion TAS 10627596
GO:0007399 nervous system development TAS 10627596
GO:0042246 tissue regeneration IEA --
genes like me logo Genes that share ontologies with NINJ2: view

No data available for Pathways by source and SIGNOR curated interactions for NINJ2 Gene

Drugs & Compounds for NINJ2 Gene

No Compound Related Data Available

Transcripts for NINJ2 Gene

Unigene Clusters for NINJ2 Gene

Ninjurin 2:
Representative Sequences:

CRISPR Products

Clone Products

  • Applied Biological Materials (abm): Clones for NINJ2 - Now 50% OFF >
  • * NINJ2 as ready-to-use vector or virus: ORF | Lenti- | Retro- | Adeno- | AAV- | Protein Vector - Browse All
  • * NINJ2 tags and reporters available: His, HA, Myc, Flag, GFP, RFP, Luciferase - Browse All

Alternative Splicing Database (ASD) splice patterns (SP) for NINJ2 Gene

No ASD Table

Relevant External Links for NINJ2 Gene

GeneLoc Exon Structure for
NINJ2
ECgene alternative splicing isoforms for
NINJ2

Expression for NINJ2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and CGAP SAGE for NINJ2 Gene

mRNA differential expression in normal tissues according to GTEx for NINJ2 Gene

This gene is overexpressed in Whole Blood (x9.3) and Brain - Spinal cord (cervical c-1) (x4.3).

Protein differential expression in normal tissues from HIPED for NINJ2 Gene

This gene is overexpressed in Frontal cortex (51.3), Spinal cord (7.9), and Testis (6.4).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for NINJ2 Gene



Protein tissue co-expression partners for NINJ2 Gene

NURSA nuclear receptor signaling pathways regulating expression of NINJ2 Gene:

NINJ2

SOURCE GeneReport for Unigene cluster for NINJ2 Gene:

Hs.656450

mRNA Expression by UniProt/SwissProt for NINJ2 Gene:

Q9NZG7-NINJ2_HUMAN
Tissue specificity: Widely expressed. In adult, higher expression in the bone marrow and peripheral blood lymphocytes, medium in the lung, lymph node, thyroid, uterus, thymus, spleen, prostate and skeletal muscle, lower in the liver, placenta, brain, heart and kidney. In embryo, higher expression in the thymus, heart and liver, lower in the spleen, lung, brain and kidney.

Evidence on tissue expression from TISSUES for NINJ2 Gene

  • Nervous system(4.4)
genes like me logo Genes that share expression patterns with NINJ2: view

No data available for Phenotype-based relationships between genes and organs from Gene ORGANizer for NINJ2 Gene

Orthologs for NINJ2 Gene

This gene was present in the common ancestor of animals.

Orthologs for NINJ2 Gene

Organism Taxonomy Gene Similarity Type Details
chimpanzee
(Pan troglodytes)
Mammalia NINJ2 35 34
  • 99.47 (n)
OneToOne
dog
(Canis familiaris)
Mammalia NINJ2 35 34
  • 86.45 (n)
OneToOne
rat
(Rattus norvegicus)
Mammalia Ninj2 34
  • 80.99 (n)
mouse
(Mus musculus)
Mammalia Ninj2 17 35 34
  • 77 (n)
cow
(Bos Taurus)
Mammalia NINJ2 35
  • 69 (a)
OneToOne
platypus
(Ornithorhynchus anatinus)
Mammalia NINJ2 35
  • 65 (a)
OneToOne
oppossum
(Monodelphis domestica)
Mammalia NINJ2 35
  • 53 (a)
OneToOne
chicken
(Gallus gallus)
Aves NINJ2 35 34
  • 68.26 (n)
OneToOne
lizard
(Anolis carolinensis)
Reptilia NINJ2 35
  • 59 (a)
OneToOne
tropical clawed frog
(Silurana tropicalis)
Amphibia ninj2 34
  • 71.11 (n)
zebrafish
(Danio rerio)
Actinopterygii ninj2 35 34
  • 67.5 (n)
OneToOne
fruit fly
(Drosophila melanogaster)
Insecta CG14394 35
  • 33 (a)
ManyToMany
CG11637 35
  • 20 (a)
ManyToMany
NijA 35
  • 18 (a)
ManyToMany
Species where no ortholog for NINJ2 was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Ashbya gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • alpha proteobacteria (Wolbachia pipientis)
  • amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • baker's yeast (Saccharomyces cerevisiae)
  • barley (Hordeum vulgare)
  • beta proteobacteria (Neisseria meningitidis)
  • bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • common water flea (Daphnia pulex)
  • corn (Zea mays)
  • E. coli (Escherichia coli)
  • filamentous fungi (Aspergillus nidulans)
  • Firmicute bacteria (Streptococcus pneumoniae)
  • fission yeast (Schizosaccharomyces pombe)
  • green algae (Chlamydomonas reinhardtii)
  • honey bee (Apis mellifera)
  • K. lactis yeast (Kluyveromyces lactis)
  • loblloly pine (Pinus taeda)
  • malaria parasite (Plasmodium falciparum)
  • medicago trunc (Medicago Truncatula)
  • moss (Physcomitrella patens)
  • orangutan (Pongo pygmaeus)
  • pig (Sus scrofa)
  • rainbow trout (Oncorhynchus mykiss)
  • rice (Oryza sativa)
  • rice blast fungus (Magnaporthe grisea)
  • schistosome parasite (Schistosoma mansoni)
  • sea anemone (Nematostella vectensis)
  • sea squirt (Ciona intestinalis)
  • sea squirt (Ciona savignyi)
  • sea urchin (Strongylocentrotus purpuratus)
  • sorghum (Sorghum bicolor)
  • soybean (Glycine max)
  • stem rust fungus (Puccinia graminis)
  • sugarcane (Saccharum officinarum)
  • thale cress (Arabidopsis thaliana)
  • tomato (Lycopersicon esculentum)
  • toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • wheat (Triticum aestivum)
  • worm (Caenorhabditis elegans)

Evolution for NINJ2 Gene

ENSEMBL:
Gene Tree for NINJ2 (if available)
TreeFam:
Gene Tree for NINJ2 (if available)
Aminode:
Evolutionary constrained regions (ECRs) for NINJ2: view image

Paralogs for NINJ2 Gene

Paralogs for NINJ2 Gene

(1) SIMAP similar genes for NINJ2 Gene using alignment to 4 proteins:

  • NINJ2_HUMAN
  • B4DNS9_HUMAN
  • F5H3L1_HUMAN
  • F8WBZ3_HUMAN
genes like me logo Genes that share paralogs with NINJ2: view

Variants for NINJ2 Gene

Sequence variations from dbSNP and Humsavar for NINJ2 Gene

SNP ID Clin Chr 12 pos Variation AA Info Type
rs1000147184 -- 604,422(-) G/A intron_variant
rs1000160075 -- 572,929(-) T/C intron_variant
rs1000175100 -- 591,085(-) TATA/TATATATA intron_variant
rs1000308021 -- 652,846(-) C/T genic_upstream_transcript_variant, intron_variant
rs1000315096 -- 647,320(-) A/G genic_upstream_transcript_variant, intron_variant

Structural Variations from Database of Genomic Variants (DGV) for NINJ2 Gene

Variant ID Type Subtype PubMed ID
dgv1333n100 CNV gain 25217958
dgv1334n100 CNV gain 25217958
dgv174n27 CNV gain 19166990
dgv2251n54 CNV gain 21841781
dgv2252n54 CNV gain 21841781
dgv60n111 CNV duplication 26073780
esv1113146 CNV deletion 17803354
esv1449891 CNV deletion 17803354
esv1606062 CNV insertion 17803354
esv2249356 CNV deletion 18987734
esv2745360 CNV deletion 23290073
esv2745361 CNV deletion 23290073
esv2745362 CNV deletion 23290073
esv2745365 CNV deletion 23290073
esv2745366 CNV deletion 23290073
esv2759875 CNV gain+loss 17122850
esv2762957 CNV gain 21179565
esv29801 CNV loss 19812545
esv3374336 CNV duplication 20981092
esv3628245 CNV gain 21293372
esv3628246 CNV gain 21293372
esv3628248 CNV loss 21293372
esv3628249 CNV gain 21293372
esv3892122 CNV gain 25118596
esv3892123 CNV gain 25118596
esv989890 CNV deletion 20482838
esv995402 CNV deletion 20482838
nsv1040579 CNV gain 25217958
nsv1042529 CNV gain 25217958
nsv1050781 CNV loss 25217958
nsv1070998 CNV deletion 25765185
nsv1130663 CNV deletion 24896259
nsv1139583 CNV deletion 24896259
nsv1141224 CNV deletion 24896259
nsv1148736 CNV deletion 26484159
nsv1153792 CNV deletion 26484159
nsv468951 CNV gain 19166990
nsv470254 CNV gain 18288195
nsv519441 CNV gain 19592680
nsv527632 CNV loss 19592680
nsv556885 CNV gain 21841781
nsv556887 CNV gain 21841781
nsv556891 CNV loss 21841781
nsv556893 CNV gain 21841781
nsv556894 CNV gain 21841781
nsv556895 CNV gain 21841781
nsv818876 CNV gain 17921354
nsv826173 CNV loss 20364138
nsv826174 CNV gain 20364138
nsv957257 CNV deletion 24416366

Variation tolerance for NINJ2 Gene

Residual Variation Intolerance Score: 71% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 2.43; 42.80% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for NINJ2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NINJ2

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NINJ2 Gene

Disorders for NINJ2 Gene

Additional Disease Information for NINJ2

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology

No disorders were found for NINJ2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NINJ2 Gene

Publications for NINJ2 Gene

  1. Ninjurin2, a novel homophilic adhesion molecule, is expressed in mature sensory and enteric neurons and promotes neurite outgrowth. (PMID: 10627596) Araki T … Milbrandt J (The Journal of neuroscience : the official journal of the Society for Neuroscience 2000) 2 3 4 58
  2. Failure to validate association between 12p13 variants and ischemic stroke. (PMID: 20410525) International Stroke Genetics Consortium … Wellcome Trust Case-Control Consortium 2 (The New England journal of medicine 2010) 3 45 58
  3. Genomewide association studies of stroke. (PMID: 19369658) Ikram MA … Wolf PA (The New England journal of medicine 2009) 3 45 58
  4. The status, quality, and expansion of the NIH full-length cDNA project: the Mammalian Gene Collection (MGC). (PMID: 15489334) Gerhard DS … MGC Project Team (Genome research 2004) 3 4 58
  5. NINJ2- A novel regulator of endothelial inflammation and activation. (PMID: 28431986) Wang J … Xu C (Cellular signalling 2017) 3 58

Products for NINJ2 Gene

Sources for NINJ2 Gene

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