Aliases for NHS-AS1 Gene

Subcategory (RNA class) for NHS-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for NHS-AS1 Gene

  • NHS Antisense RNA 1 2 3 5
  • NHS-AS1 2 5 165
  • NHS Antisense RNA 1 (Non-Protein Coding) 2 3
  • NONHSAG054104.2 91
  • HSALNG0136856 164

External Ids for NHS-AS1 Gene

Previous GeneCards Identifiers for NHS-AS1 Gene

  • GC00U933688

Summaries for NHS-AS1 Gene

GeneCards Summary for NHS-AS1 Gene

NHS-AS1 (NHS Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NHS-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NHS-AS1 Gene

Genomics for NHS-AS1 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NHS-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH0XJ017559 Enhancer 0.8 ENCODE CraniofacialAtlas 600.7 -1.3 -1314 1.9 ZNF37A SCRT2 SP1 BRCA1 ESR1 CEBPB FOS ZSCAN5C JUN ZBTB48 NHS-AS1 TXLNG CTPS2 piR-31534-709 LOC101928389 SCML1 NHS
GH0XJ017580 Enhancer 0.3 Ensembl ENCODE 12.9 -21.9 -21868 1.7 NHS-AS1 piR-55194-428 piR-33804-169 LOC101928389 SCML1 NHS
GH0XJ017579 Enhancer 0.3 Ensembl 12.9 -20.6 -20574 0.6 SMARCA4 NHS-AS1 piR-55194-428 piR-33804-169 LOC101928389 SCML1 NHS
GH0XJ017552 Enhancer 0.7 Ensembl ENCODE 0.4 +5.0 5026 4.6 JUND CEBPB MAX NR2F2 JUN GATA2 POLR2A NHS NHS-AS1 LOC101928389 SCML1
GH0XJ017546 Enhancer 0.7 ENCODE 0.4 +10.7 10720 2.9 ZIC2 NFE2 ZNF316 MAFF TCF12 FOS MAFK JUND MAFG MAX NHS NHS-AS1 LOC101928389 SCML1
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NHS-AS1 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NHS-AS1 Gene

Genomic Locations for NHS-AS1 Gene
chrX:17,552,349-17,559,127
(GRCh38/hg38)
Size:
6,779 bases
Orientation:
Minus strand
chrX:17,570,470-17,575,508
(GRCh37/hg19)
Size:
5,039 bases
Orientation:
Minus strand

Genomic View for NHS-AS1 Gene

Genes around NHS-AS1 on UCSC Golden Path with GeneCards custom track
NHS-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
NHS-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NHS-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NHS-AS1 Gene

Proteins for NHS-AS1 Gene

Post-translational modifications for NHS-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NHS-AS1 Gene

Domains & Families for NHS-AS1 Gene

Gene Families for NHS-AS1 Gene

genes like me logo Genes that share domains with NHS-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NHS-AS1 Gene

Function for NHS-AS1 Gene

Phenotypes From GWAS Catalog for NHS-AS1 Gene

Animal Model Products

CRISPR Products

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NHS-AS1 Gene

Localization for NHS-AS1 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NHS-AS1 Gene

Pathways & Interactions for NHS-AS1 Gene

PathCards logo

SuperPathways for NHS-AS1 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NHS-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NHS-AS1 Gene

Drugs & Compounds for NHS-AS1 Gene

No Compound Related Data Available

Transcripts for NHS-AS1 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NHS-AS1 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS000075DB40_9606 lncRNA 383 5

HGNC: 40403,

RefSeq: NR_046632,

LncBook: HSALNT0280598,

LNCipedia: NHS-AS1:1,

NONCODE: NONHSAT223212.1,

URS000040E73B_9606 lncRNA 366 4

Ensembl: ENST00000452788 (view in UCSC) ,

LncBook: HSALNT0280597,

LNCipedia: NHS-AS1:2,

NONCODE: NONHSAT136403.2,

NHS-AS1 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NHS-AS1 Gene

1 NCBI additional mRNA sequence :

CRISPR Products

Alternative Splicing Database (ASD) splice patterns (SP) for NHS-AS1 Gene

No ASD Table

Relevant External Links for NHS-AS1 Gene

GeneLoc Exon Structure for
NHS-AS1

Expression for NHS-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NHS-AS1 Gene

genes like me logo Genes that share expression patterns with NHS-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NHS-AS1 Gene

Orthologs for NHS-AS1 Gene

Evolution for NHS-AS1 Gene

ENSEMBL:
Gene Tree for NHS-AS1 (if available)
TreeFam:
Gene Tree for NHS-AS1 (if available)

No data available for Orthologs for NHS-AS1 Gene

Paralogs for NHS-AS1 Gene

No data available for Paralogs for NHS-AS1 Gene

Variants for NHS-AS1 Gene

Additional dbSNP identifiers (rs#s) for NHS-AS1 Gene

Additional Variant Information for NHS-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NHS-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP , Structural Variations from Database of Genomic Variants (DGV) and Variation tolerance for NHS-AS1 Gene

Disorders for NHS-AS1 Gene

Additional Disease Information for NHS-AS1

No disorders were found for NHS-AS1 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NHS-AS1 Gene

Publications for NHS-AS1 Gene

No publications were found for NHS-AS1 Gene.

Products for NHS-AS1 Gene

Sources for NHS-AS1 Gene