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NGF-AS1 (NGF Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with NGF-AS1 include Neuropathy, Hereditary Sensory And Autonomic, Type V and Charcot-Marie-Tooth Disease.
GeneHancer (GH) Identifier | GH Type | GH Score |
GH Sources | Gene Association Score | Total Score | TSS distance (kb) | Number of Genes Away | Size (kb) | Transcription Factor Binding Sites |
Gene Targets |
---|---|---|---|---|---|---|---|---|---|---|
GH01J115282 | Promoter/Enhancer | 1.3 | EPDnew Ensembl ENCODE dbSUPER | 256.6 | +54.5 | 54458 | 2.8 | RXRA JUND RAD21 SP1 DACH1 NR2F2 | NGF-AS1 ENSG00000285698 piR-45035-012 NGF TSPAN2 | |
GH01J115227 | Enhancer | 0.7 | Ensembl ENCODE dbSUPER | 250.7 | -0.9 | -901 | 2.4 | CEBPB FOS | NGF-AS1 NGF HSALNG0006266 lnc-TSHB-2 TSPAN2 | |
GH01J115230 | Enhancer | 0.2 | Ensembl | 250.7 | +1.2 | 1221 | 1 | NGF-AS1 NGF HSALNG0006268 lnc-TSHB-2 TSPAN2 | ||
GH01J115188 | Enhancer | 1.3 | FANTOM5 Ensembl ENCODE dbSUPER | 10.6 | -39.0 | -38980 | 3.4 | CEBPB MAX EP300 RFX5 SMC3 STAT3 BCL6 TBP RAD21 JUND | NGF NGF-AS1 SIKE1 lnc-TSHB-2 HSALNG0006266 TSPAN2 | |
GH01J115425 | Enhancer | 1.1 | FANTOM5 Ensembl ENCODE | 10.5 | +199.9 | 199921 | 7.6 | CEBPA BRCA1 CEBPB CUX1 MAX MAFF EP300 CTBP1 RFX5 STAT3 | NGF SIKE1 TRIM33 NGF-AS1 ATP1A1-AS1 HSALNG0006273 RF00994-048 VANGL1 |
RNAcentral Transcript ID | Subcategory | Length (nts) | # of Sources | Source Identifiers and Annotations |
---|---|---|---|---|
URS0000049FC4_9606 | lncRNA | 2610 | 3 |
RefSeq: NR_157569, Ensembl: ENST00000425449 (view in UCSC) , LNCipedia: NGF-AS1:8, |
URS00008B27EE_9606 | lncRNA | 2801 | 3 |
LncBook: HSALNT0013112, LNCipedia: NGF-AS1:9, NONCODE: NONHSAT005387.2, |
URS00009B38BE_9606 | lncRNA | 2610 | 2 |
LncBook: HSALNT0013113, NONCODE: NONHSAT149634.1, |
URS0001BEDC76_9606 | lncRNA | 7910 | 1 |
LncBook: HSALNT0013105, |
URS0001BD4097_9606 | lncRNA | 7646 | 1 |
LncBook: HSALNT0013111, |
SNP ID | Clinical significance and condition | Chr 01 pos | Variation | AA Info | Type |
---|---|---|---|---|---|
834309 | Uncertain Significance: Congenital sensory neuropathy with selective loss of small myelinated fibers | 115,286,234(+) |
C/G NM_002506.3(NGF):c.562G>C (p.Gly188Arg) |
MISSENSE | |
835507 | Uncertain Significance: Congenital sensory neuropathy with selective loss of small myelinated fibers | 115,286,478(+) |
C/G NM_002506.3(NGF):c.318G>C (p.Glu106Asp) |
MISSENSE | |
837334 | Uncertain Significance: Congenital sensory neuropathy with selective loss of small myelinated fibers | 115,286,164(+) |
A/G NM_002506.3(NGF):c.632T>C (p.Leu211Pro) |
MISSENSE | |
841314 | Uncertain Significance: Congenital sensory neuropathy with selective loss of small myelinated fibers | 115,286,558(+) |
G/A NM_002506.3(NGF):c.238C>T (p.Arg80Trp) |
MISSENSE | |
848301 | Uncertain Significance: Congenital sensory neuropathy with selective loss of small myelinated fibers | 115,286,612(+) |
G/A NM_002506.3(NGF):c.184C>T (p.Arg62Cys) |
MISSENSE |
Disorder | Aliases | PubMed IDs |
---|---|---|
neuropathy, hereditary sensory and autonomic, type v |
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charcot-marie-tooth disease |
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