NGF Gene (Protein Coding)

Nerve Growth Factor

GC01M115285
GIFtS:
50
This gene is a member of the NGF-beta family and encodes a secreted protein which homodimerizes and is incorporated into a larger complex. This protein has nerve growth stimulating activity and the complex is involved in the regulation of growth and the differentiation of sympathetic and certain sensory neurons. Mutations in this gene have been associated with hereditary sensor... See more...

Aliases for NGF Gene

Aliases for NGF Gene

  • Nerve Growth Factor 2 3 5
  • Nerve Growth Factor (Beta Polypeptide) 2 3
  • Beta-Nerve Growth Factor 3 4
  • Beta-NGF 3 4
  • NGFB 3 4
  • Nerve Growth Factor, Beta Subunit 3
  • Pro-Nerve Growth Factor Long 3
  • HSAN5 3
  • NGF 5

External Ids for NGF Gene

Previous HGNC Symbols for NGF Gene

  • NGFB

Previous GeneCards Identifiers for NGF Gene

  • GC01M115630
  • GC01M115828
  • GC01M113686

Summaries for NGF Gene

Entrez Gene Summary for NGF Gene

  • This gene is a member of the NGF-beta family and encodes a secreted protein which homodimerizes and is incorporated into a larger complex. This protein has nerve growth stimulating activity and the complex is involved in the regulation of growth and the differentiation of sympathetic and certain sensory neurons. Mutations in this gene have been associated with hereditary sensory and autonomic neuropathy, type 5 (HSAN5), and dysregulation of this gene's expression is associated with allergic rhinitis. [provided by RefSeq, Jul 2008]

GeneCards Summary for NGF Gene

NGF (Nerve Growth Factor) is a Protein Coding gene. Diseases associated with NGF include Neuropathy, Hereditary Sensory And Autonomic, Type V and Autonomic Neuropathy. Among its related pathways are Neuroscience and NGF Pathway. Gene Ontology (GO) annotations related to this gene include signaling receptor binding and obsolete signal transducer activity, downstream of receptor. An important paralog of this gene is NTF3.

UniProtKB/Swiss-Prot Summary for NGF Gene

  • Nerve growth factor is important for the development and maintenance of the sympathetic and sensory nervous systems (PubMed:14976160, PubMed:20978020). Extracellular ligand for the NTRK1 and NGFR receptors, activates cellular signaling cascades to regulate neuronal proliferation, differentiation and survival (PubMed:20978020) (Probable). The immature NGF precursor (proNGF) functions as ligand for the heterodimeric receptor formed by SORCS2 and NGFR, and activates cellular signaling cascades that lead to inactivation of RAC1 and/or RAC2, reorganization of the actin cytoskeleton and neuronal growth cone collapse. In contrast to mature NGF, the precursor form (proNGF) promotes neuronal apoptosis (in vitro) (By similarity). Inhibits metalloproteinase-dependent proteolysis of platelet glycoprotein VI (PubMed:20164177). Binds lysophosphatidylinositol and lysophosphatidylserine between the two chains of the homodimer. The lipid-bound form promotes histamine relase from mast cells, contrary to the lipid-free form (By similarity).

Tocris Summary for NGF Gene

  • Trk (neurotrophin) receptors are single transmembrane catalytic receptors with intracellular tyrosine kinase activity. Trk receptors are coupled to the Ras, Cdc42/Rac/RhoG, MAPK, PI3K and PLCgamma signaling pathways. Four members of the Trk family have been identified.

Gene Wiki entry for NGF Gene

Additional gene information for NGF Gene

No data available for CIViC Summary , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NGF Gene

Genomics for NGF Gene

GeneHancer (GH) Regulatory Elements Pubs

Download GeneHancer 2017 data
Promoters and enhancers for NGF Gene
GeneHancer (GH) Identifier GH Type GH
Score		 GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites		 Gene Targets
GH01J115337 Promoter/Enhancer 1.6 EPDnew Ensembl ENCODE dbSUPER 606 +0.4 428 2 ZNF629 ZNF692 PRDM1 ZIC2 ZSCAN4 PATZ1 ZNF501 POLR2A EZH2 ZNF600 NGF lnc-TSPAN2-1 NGF-AS1 TSPAN2
GH01J115339 Enhancer 0.3 Ensembl 600.7 -1.1 -1148 0.4 SMARCA4 NGF piR-49423-012 NGF-AS1 VANGL1
GH01J115425 Enhancer 1.1 FANTOM5 Ensembl ENCODE 17.5 -90.8 -90848 7.4 ZNF629 RFX1 JUND GABPA PRDM1 PKNOX1 CEBPA SCRT2 CEBPB ZBTB20 NGF SIKE1 TRIM33 NGF-AS1 ATP1A1-AS1 RF00994-048 lnc-VANGL1-4 ENSG00000226973 VANGL1
GH01J115188 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 13.3 +147.6 147603 3.9 PKNOX1 MNT SP1 JUND NFE2 CEBPB ZNF316 JUN FOSL1 MAFG NGF NGF-AS1 SIKE1 lnc-TSHB-2 piR-45035-012 TSPAN2
GH01J115314 Enhancer 0.9 Ensembl ENCODE dbSUPER 19.2 +23.6 23552 2.6 TEAD4 FOXA1 CEBPB CTBP1 ZFHX2 POLR2A BHLHE40 SMARCA4 MNT EGR2 NGF NGF-AS1 lnc-TSPAN2-1 ENSG00000285698 TSPAN2
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NGF on the GeneHancer Hub at the UCSC Golden Path

Cistromic (ChIP-Seq) regulation report from SPP (The Signaling Pathways Project) for NGF

Top Transcription factor binding sites by QIAGEN in the NGF gene promoter:
  • AP-2alpha
  • AP-2alpha isoform 2
  • AP-2alpha isoform 3
  • AP-2alpha isoform 4
  • AP-2alphaA
  • deltaCREB
  • FOXO1
  • FOXO1a
  • STAT3
  • STAT5A

Genomic Locations for NGF Gene

Genomic Locations for NGF Gene
chr1:115,285,915-115,338,253
(GRCh38/hg38)
Size:
52,339 bases
Orientation:
Minus strand
chr1:115,828,537-115,880,857
(GRCh37/hg19)
Size:
52,321 bases
Orientation:
Minus strand

Genomic View for NGF Gene

Genes around NGF on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NGF Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NGF Gene
GeneLoc Logo Genomic Neighborhood • Exon Structure • Gene Density

RefSeq DNA sequence for NGF Gene

Proteins for NGF Gene

Products:

  1. Antibody
  2. Protein
  3. Assay

  • Protein details for NGF Gene (UniProtKB/Swiss-Prot)

    Protein Symbol:
    P01138-NGF_HUMAN
    Recommended name:
    Beta-nerve growth factor
    Protein Accession:
    P01138
    Secondary Accessions:
    • A1A4E5
    • Q6FHA0
    • Q96P60
    • Q9P2Q8
    • Q9UKL8

    Protein attributes for NGF Gene

    Size:
    241 amino acids
    Molecular mass:
    26959 Da
    Quaternary structure:
    • Homodimer (PubMed:10490030, PubMed:15131306, PubMed:17196528). The homodimer interacts with a single NTRK1 chain (PubMed:10490030, PubMed:17196528). The homodimer interacts with a single NGFR chain (PubMed:15131306). The NGF dimer interacts with a single SORCS2 chain (via extracellular domain) (By similarity). The NGF precursor (proNGF) binds to a receptor complex formed by SORT1 and NGFR, which leads to NGF endocytosis. Both mature NGF and the immature NGF precursor (proNGF) interact with SORCS2 and with the heterodimer formed by SORCS2 and NGFR (via extracellular domains) (By similarity). The NGF precursor (proNGF) has much higher affinity for SORCS2 than mature NGF. The NGF precursor (proNGF) has much higher affinity for SORT1 than mature NGF (By similarity). Interacts with ADAM10 in a divalent cation-dependent manner (PubMed:20164177).
    SequenceCaution:
    • Sequence=AAH32517.2; Type=Erroneous initiation; Note=Extended N-terminus.; Evidence={ECO:0000305};

    Three dimensional structures from OCA and Proteopedia for NGF Gene

neXtProt entry for NGF Gene

Protein Expression for NGF Gene

See protein expression from ProteomicsDB, MOPED, PaxDb, and MaxQB

Post-translational modifications for NGF Gene

  • Glycosylation at Ser43, Thr46, Asn69, and Asn114
  • Modification sites at PhosphoSitePlus

Other Protein References for NGF Gene

ENSEMBL proteins:
REFSEQ proteins:

No data available for DME Specific Peptides for NGF Gene

Domains & Families for NGF Gene

Gene Families for NGF Gene

HGNC:
Human Protein Atlas (HPA):
  • Cancer-related genes
  • Candidate cardiovascular disease genes
  • Disease related genes
  • Plasma proteins
  • Predicted secreted proteins

Protein Domains for NGF Gene

InterPro:
Blocks:
  • Nerve growth factor
ProtoNet:

Suggested Antigen Peptide Sequences for NGF Gene

GenScript: Design optimal peptide antigens:
  • Beta-nerve growth factor (NGF_HUMAN)

Graphical View of Domain Structure for InterPro Entry

P01138

UniProtKB/Swiss-Prot:

NGF_HUMAN :
  • Belongs to the NGF-beta family.
Family:
  • Belongs to the NGF-beta family.
genes like me logo Genes that share domains with NGF: view

Function for NGF Gene

Products:

  1. Animal Model
  2. CRISPR
  3. miRNA
  4. Inhibitory RNA
  5. Clone
  6. Cell Line

Molecular function for NGF Gene

UniProtKB/Swiss-Prot Function:
Nerve growth factor is important for the development and maintenance of the sympathetic and sensory nervous systems (PubMed:14976160, PubMed:20978020). Extracellular ligand for the NTRK1 and NGFR receptors, activates cellular signaling cascades to regulate neuronal proliferation, differentiation and survival (PubMed:20978020) (Probable). The immature NGF precursor (proNGF) functions as ligand for the heterodimeric receptor formed by SORCS2 and NGFR, and activates cellular signaling cascades that lead to inactivation of RAC1 and/or RAC2, reorganization of the actin cytoskeleton and neuronal growth cone collapse. In contrast to mature NGF, the precursor form (proNGF) promotes neuronal apoptosis (in vitro) (By similarity). Inhibits metalloproteinase-dependent proteolysis of platelet glycoprotein VI (PubMed:20164177). Binds lysophosphatidylinositol and lysophosphatidylserine between the two chains of the homodimer. The lipid-bound form promotes histamine relase from mast cells, contrary to the lipid-free form (By similarity).

LifeMap Function Summary for NGF Gene

It affects the following cells:
NGF as growth factor is involved in stem cell differentiation protocols towards the derivation of the following cells:

Phenotypes From GWAS Catalog for NGF Gene

Gene Ontology (GO) - Molecular Function for NGF Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0004857 enzyme inhibitor activity IEA --
GO:0005102 signaling receptor binding IEA --
GO:0005163 nerve growth factor receptor binding IBA,IPI 14985763
GO:0005515 protein binding IPI 10490030
GO:0008083 growth factor activity IBA 21873635
genes like me logo Genes that share ontologies with NGF: view
genes like me logo Genes that share phenotypes with NGF: view

Human Phenotype Ontology for NGF Gene

HPO Id HPO Name Alternative Ids Definition Synonyms

Animal Models for NGF Gene

MGI Knock Outs for NGF:
  • Ngf Ngf<tm1Gne>
  • Ngf Ngf<tm1Ddg>

CRISPR Products

miRNA for NGF Gene

miRTarBase miRNAs that target NGF

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for NGF

No data available for Enzyme Numbers (IUBMB) , Transcription Factor Targets and HOMER Transcription for NGF Gene

Localization for NGF Gene

Subcellular locations from UniProtKB/Swiss-Prot for NGF Gene

Secreted. Endosome lumen. Note=ProNGF is endocytosed after binding to the cell surface receptor formed by SORT1 and NGFR. {ECO:0000250 UniProtKB:P01139}.

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NGF gene
Compartment Confidence
extracellular 5
cytosol 5
endosome 4
golgi apparatus 4
plasma membrane 3
cytoskeleton 3
mitochondrion 3
nucleus 3
lysosome 3
peroxisome 2
endoplasmic reticulum 2

Gene Ontology (GO) - Cellular Components for NGF Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0005576 extracellular region TAS --
GO:0005615 extracellular space IBA 21873635
GO:0005768 endosome IEA --
GO:0005796 Golgi lumen TAS --
GO:0005829 cytosol TAS --
genes like me logo Genes that share ontologies with NGF: view

No data available for Subcellular locations from the Human Protein Atlas (HPA) for NGF Gene

Pathways & Interactions for NGF Gene

PathCards logo

SuperPathways for NGF Gene

SuperPathway Contained pathways
1 Apoptotic Pathways in Synovial Fibroblasts
Cellular Apoptosis Pathway
.85
Mitochondrial Apoptosis
.85
Apoptotic Pathways in Synovial Fibroblasts
.84
p53 Mediated Apoptosis
.84
DHA Signaling
.74
Telomerase Components in Cell Signaling
.72
PPAR Pathway
.66
Rac1 Pathway
.65
Glioma Invasiveness
.64
Actin-Based Motility by Rho Family GTPases
.62
ERK5 Signaling
.61
eIF2 Pathway
.60
Rap1 Pathway
.57
Nuclear Receptor Activation by Vitamin-A
.57
2 p75 NTR receptor-mediated signalling
Cell death signalling via NRAGE, NRIF and NADE
.79
NRAGE signals death through JNK
.79
p75 NTR receptor-mediated signalling
.78
Axonal growth stimulation
.01
NADE modulates death signalling
.01
NF-kB is activated and signals survival
.01
NRIF signals cell death from the nucleus
.01
p75NTR negatively regulates cell cycle via SC1
.01
p75NTR recruits signalling complexes
.01
p75NTR regulates axonogenesis
.01
p75NTR signals via NF-kB
.01
3 RET signaling
Frs2-mediated activation
.95
Prolonged ERK activation events
.95
ARMS-mediated activation
.95
Signalling to ERKs
.95
Signalling to p38 via RIT and RIN
.95
Signalling to RAS
.95
NGF signalling via TRKA from the plasma membrane
.87
Signalling by NGF
.81
4 GPCR Pathway
Paxillin Interactions
.73
Ras Pathway
.73
GPCR Pathway
.62
Pancreatic Adenocarcinoma
.59
Breast Cancer Regulation by Stathmin1
.58
NFAT in Immune Response
.58
Estrogen Pathway
.55
5 ERK Signaling
ERK Signaling
.61
Rho Family GTPases
.61
MAPK Signaling
.58
Molecular Mechanisms of Cancer
.51
ILK Signaling
.49
genes like me logo Genes that share pathways with NGF: view

Pathways by source for NGF Gene

1 Sino Biological pathway for NGF Gene
6 GeneGo (Thomson Reuters) pathways for NGF Gene
  • Apoptosis and survival Anti-apoptotic TNFs/NF-kB/Bcl-2 pathway
  • Apoptosis and survival Apoptotic TNF-family pathways
  • Apoptosis and survival NGF signaling pathway
  • Apoptosis and survival Role of CDK5 in neuronal death and survival
  • Development MAG-dependent inhibition of neurite outgrowth
63 Qiagen pathways for NGF Gene
  • 14-3-3 and Regulation of BAD Activity
  • 14-3-3 Induced Intracellular Signaling
  • Actin-Based Motility by Rho Family GTPases
  • Activation of cAMP-Dependent PKA
  • Activation of PKA through GPCR
1 Cell Signaling Technology pathway for NGF Gene

SIGNOR curated interactions for NGF Gene

Activates:
Is activated by:

Gene Ontology (GO) - Biological Process for NGF Gene

GO ID Qualified GO term Evidence PubMed IDs
GO:0000186 activation of MAPKK activity TAS --
GO:0006919 activation of cysteine-type endopeptidase activity involved in apoptotic process TAS --
GO:0007169 transmembrane receptor protein tyrosine kinase signaling pathway IBA 21873635
GO:0007422 peripheral nervous system development IBA 21873635
GO:0007613 memory IBA 21873635
genes like me logo Genes that share ontologies with NGF: view

Drugs & Compounds for NGF Gene

Products:

  1. Drug

(100) Drugs for NGF Gene - From: DrugBank, PharmGKB, ClinicalTrials, ApexBio, DGIdb, HMDB, Tocris, and Novoseek

Name Status Disease Links Group Role Mechanism of Action Clinical Trials
Clenbuterol Approved, Investigational, Vet_approved Pharma Target, stimulator 7
Methadone Approved Pharma 402
Alprostadil Approved, Investigational Pharma 101
Polaprezinc Experimental Pharma Target, agonist 5
Tanezumab Investigational Pharma 40

(53) Additional Compounds for NGF Gene - From: Novoseek and Tocris

Name Synonyms Role CAS Number PubChem IDs PubMed IDs
AG 879
148741-30-4
LM11A 31 dihydrochloride
1243259-19-9

(4) Tocris Compounds for NGF Gene

Compound Action Cas Number
AG 879 TrkA inhibitor 148741-30-4
BDNF (human) Activates TrkB and p75 receptors 218441-99-7
LM11A 31 dihydrochloride Nonpeptide p75NTR ligand; neuroprotective 1243259-19-9
TLQP 21 VGF-derived peptide 869988-94-3

(2) ApexBio Compounds for NGF Gene

Compound Action Cas Number
Cyclotraxin B 1203586-72-4
Ro 08-2750 antagonist of nerve growth factor (NGF) 37854-59-4
genes like me logo Genes that share compounds with NGF: view

Transcripts for NGF Gene

Products:

  1. CRISPR
  2. miRNA
  3. Inhibitory RNA
  4. Clone

mRNA/cDNA for NGF Gene

1 REFSEQ mRNAs :
9 NCBI additional mRNA sequence :
1 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :

CRISPR Products

Inhibitory RNA Products

  • Search GeneCopoeia for shRNA, lentivirus and/or AAV clone products for NGF

Alternative Splicing Database (ASD) splice patterns (SP) for NGF Gene

No ASD Table

Relevant External Links for NGF Gene

GeneLoc Exon Structure for
NGF

Expression for NGF Gene

Products:

  1. Primer
  2. Gene Expression Assay

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NGF Gene

mRNA expression in normal human tissues for NGF Gene
mRNA expression by BioGPS for NGF GenemRNA expression by GTEx for NGF Gene

mRNA expression in embryonic tissues and stem cells from LifeMap Discovery

mRNA differential expression in normal tissues according to GTEx for NGF Gene

This gene is overexpressed in Heart - Atrial Appendage (x4.7), Ovary (x4.6), and Artery - Aorta (x4.2).

Protein differential expression in normal tissues from HIPED for NGF Gene

This gene is overexpressed in Breast (69.0).

Integrated Proteomics: protein expression in normal tissues and cell lines from ProteomicsDB and MOPED for NGF Gene



Protein tissue co-expression partners for NGF Gene

- Elite partner

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NGF

SOURCE GeneReport for Unigene cluster for NGF Gene:

Hs.2561

Evidence on tissue expression from TISSUES for NGF Gene

  • Nervous system(4.8)
  • Blood(4.6)
  • Eye(4.6)
  • Adrenal gland(3.8)
  • Muscle(3.2)
  • Heart(3.1)
  • Skin(3)
  • Bone(2.6)
  • Kidney(2.6)
  • Bone marrow(2.5)
  • Intestine(2.4)
  • Liver(2.4)
  • Spleen(2.3)
  • Lung(2.3)
  • Pancreas(2.2)
  • Urine(2.2)
  • Thyroid gland(2.1)
  • Lymph node(2.1)

Phenotype-based relationships between genes and organs from Gene ORGANizer for NGF Gene

Germ Layers:
  • ectoderm
  • mesoderm
Systems:
  • immune
  • integumentary
  • nervous
  • skeleton
Regions:
Head and neck:
  • brain
  • head
  • jaw
  • mandible
  • maxilla
  • mouth
  • neck
  • skull
Thorax:
  • chest wall
  • clavicle
  • rib
  • rib cage
  • scapula
  • sternum
Pelvis:
  • pelvis
Limb:
  • ankle
  • arm
  • digit
  • elbow
  • femur
  • fibula
  • finger
  • foot
  • forearm
  • hand
  • hip
  • humerus
  • knee
  • lower limb
  • radius
  • shin
  • shoulder
  • thigh
  • tibia
  • toe
  • ulna
  • upper limb
  • wrist
General:
  • blood vessel
  • skin
  • spinal column
  • spinal cord
  • vertebrae
genes like me logo Genes that share expression patterns with NGF: view

No data available for mRNA Expression by UniProt/SwissProt for NGF Gene

Orthologs for NGF Gene

This gene was present in the common ancestor of chordates.

Orthologs for NGF Gene

Organism Taxonomy Gene Similarity Type Details
Chimpanzee
(Pan troglodytes)
 Mammalia NGF 30 31
  • 99.03 (n)
 OneToOne
Cow
(Bos Taurus)
 Mammalia NGF 30 31
  • 87.97 (n)
 OneToOne
Dog
(Canis familiaris)
 Mammalia NGF 30
  • 87.41 (n)
NGFB 31
  • 76 (a)
 OneToOne
Rat
(Rattus norvegicus)
 Mammalia Ngf 30
  • 85.62 (n)
Mouse
(Mus musculus)
 Mammalia Ngf 30 17 31
  • 85.48 (n)
 OneToOne
Oppossum
(Monodelphis domestica)
 Mammalia NGF 31
  • 68 (a)
 OneToOne
Chicken
(Gallus gallus)
 Aves NGF 30 31
  • 70.23 (n)
 OneToOne
Lizard
(Anolis carolinensis)
 Reptilia NGFB 31
  • 56 (a)
 OneToOne
Tropical Clawed Frog
(Silurana tropicalis)
 Amphibia ngf 30
  • 69.05 (n)
Zebrafish
(Danio rerio)
 Actinopterygii ngf 31
  • 51 (a)
 OneToMany
ntf7 30 31
  • 44 (a)
 OneToMany
Species where no ortholog for NGF was found in the sources mined by GeneCards:
  • A. gosspyii yeast (Eremothecium gossypii)
  • Actinobacteria (Mycobacterium tuberculosis)
  • African clawed frog (Xenopus laevis)
  • African malaria mosquito (Anopheles gambiae)
  • Alicante grape (Vitis vinifera)
  • Alpha proteobacteria (Wolbachia pipientis)
  • Amoeba (Dictyostelium discoideum)
  • Archea (Pyrococcus horikoshii)
  • Baker's yeast (Saccharomyces cerevisiae)
  • Barley (Hordeum vulgare)
  • Beta proteobacteria (Neisseria meningitidis)
  • Bread mold (Neurospora crassa)
  • Chromalveolata (Phytophthora infestans)
  • Common water flea (Daphnia pulex)
  • Corn (Zea mays)
  • E. coli (Escherichia coli)
  • Filamentous fungi (Aspergillus nidulans)
  • Firmicute Bacteria (Streptococcus pneumoniae)
  • Fission Yeast (Schizosaccharomyces pombe)
  • Fruit Fly (Drosophila melanogaster)
  • Green Algae (Chlamydomonas reinhardtii)
  • Honey Bee (Apis mellifera)
  • K. Lactis Yeast (Kluyveromyces lactis)
  • Loblloly Pine (Pinus taeda)
  • Malaria Parasite (Plasmodium falciparum)
  • Medicago Trunc (Medicago Truncatula)
  • Moss (Physcomitrella patens)
  • Orangutan (Pongo pygmaeus)
  • Pig (Sus scrofa)
  • Platypus (Ornithorhynchus anatinus)
  • Rainbow Trout (Oncorhynchus mykiss)
  • Rice (Oryza sativa)
  • Rice Blast Fungus (Magnaporthe grisea)
  • Schistosome Parasite (Schistosoma mansoni)
  • Sea Anemone (Nematostella vectensis)
  • Sea Vase (Ciona intestinalis)
  • Sea Squirt (Ciona savignyi)
  • Sea Urchin (Strongylocentrotus purpuratus)
  • Sorghum (Sorghum bicolor)
  • Soybean (Glycine max)
  • Stem Rust Fungus (Puccinia graminis)
  • Sugarcane (Saccharum officinarum)
  • Thale Cress (Arabidopsis thaliana)
  • Tomato (Lycopersicon esculentum)
  • Toxoplasmosis (Toxoplasma gondii)
  • Trichoplax (Trichoplax adhaerens)
  • Wheat (Triticum aestivum)
  • Worm (Caenorhabditis elegans)

Evolution for NGF Gene

ENSEMBL:
Gene Tree for NGF (if available)
TreeFam:
Gene Tree for NGF (if available)
Aminode:
Evolutionary constrained regions (ECRs) for NGF: view image

Paralogs for NGF Gene

Paralogs for NGF Gene

(3) SIMAP similar genes for NGF Gene using alignment to 1 proteins:

  • NGF_HUMAN
genes like me logo Genes that share paralogs with NGF: view

Variants for NGF Gene

Products:

  1. SNP Genotyping and Copy Number Assay

Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP for NGF Gene

SNP ID Clinical significance and condition Chr 01 pos Variation AA Info Type
637364 Uncertain Significance: Charcot-Marie-Tooth disease 115,286,236(-) C/T MISSENSE_VARIANT
637470 Uncertain Significance: Congenital sensory neuropathy with selective loss of small myelinated fibers; Charcot-Marie-Tooth disease 115,286,116(-) G/T MISSENSE_VARIANT
637471 Uncertain Significance: Charcot-Marie-Tooth disease 115,286,113(-) GCC/G FRAMESHIFT_VARIANT
640133 Uncertain Significance: Congenital sensory neuropathy with selective loss of small myelinated fibers 115,286,636(-) C/T MISSENSE_VARIANT
641309 Uncertain Significance: Congenital sensory neuropathy with selective loss of small myelinated fibers 115,286,357(-) T/A MISSENSE_VARIANT

Additional dbSNP identifiers (rs#s) for NGF Gene

Structural Variations from Database of Genomic Variants (DGV) for NGF Gene

Variant ID Type Subtype PubMed ID
esv26121 CNV loss 19812545
esv34370 CNV gain 17911159
nsv159371 CNV deletion 16902084
nsv818389 CNV gain 17921354

Variation tolerance for NGF Gene

Residual Variation Intolerance Score: 43.6% of all genes are more intolerant (likely to be disease-causing)
Gene Damage Index Score: 8.58; 86.12% of all genes are more intolerant (likely to be disease-causing)

Additional Variant Information for NGF Gene

Human Gene Mutation Database (HGMD)
NGF
SNPedia medical, phenotypic, and genealogical associations of SNPs for
NGF

SNP Genotyping and Copy Number Assay Products

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot for NGF Gene

Disorders for NGF Gene

MalaCards: The human disease database

(134) MalaCards diseases for NGF Gene - From: UniProtKB/Swiss-Prot, OMIM, ClinVar, GTR, Orphanet, DISEASES, Novoseek, and GeneCards

Disorder Aliases PubMed IDs
neuropathy, hereditary sensory and autonomic, type v
  • indifference to pain, congenital, autosomal recessive
autonomic neuropathy
corneal ulcer
interstitial cystitis
  • pbs
anhidrosis
  • absence of sweating
- elite association - COSMIC cancer census association via MalaCards
Search NGF in MalaCards View complete list of genes associated with diseases

UniProtKB/Swiss-Prot

NGF_HUMAN
  • Neuropathy, hereditary sensory and autonomic, 5 (HSAN5) [MIM:608654]: A form of hereditary sensory and autonomic neuropathy, a genetically and clinically heterogeneous group of disorders characterized by degeneration of dorsal root and autonomic ganglion cells, and by sensory and/or autonomic abnormalities. HSAN5 patients manifest loss of pain perception and impaired temperature sensitivity, ulcers, and in some cases self-mutilation. The autonomic involvement is variable. {ECO:0000269 PubMed:14976160, ECO:0000269 PubMed:20978020, ECO:0000269 PubMed:22302274}. Note=The disease is caused by mutations affecting the gene represented in this entry.

Additional Disease Information for NGF

Genetic Association Database
(GAD)
Human Genome Epidemiology Navigator
(HuGE)
ATLAS of Genetics and Cytogenetics in Oncology and Haematology
Open Targets Platform
genes like me logo Genes that share disorders with NGF: view

No data available for Genatlas for NGF Gene

Publications for NGF Gene

  1. Variation in the BDNF and NGFB genes in German atopic dermatitis patients. (PMID: 19038326) Hoffjan S … Stemmler S (Molecular and cellular probes 2009) 3 23 41
  2. Association study of 10 genes encoding neurotrophic factors and their receptors in adult and child attention-deficit/hyperactivity disorder. (PMID: 18179783) Ribasés M … Bayés M (Biological psychiatry 2008) 3 23 41
  3. SNPs in neurotrophin system genes and Alzheimer's disease in an Italian population. (PMID: 18780967) Cozza A … Pellegrini S (Journal of Alzheimer's disease : JAD 2008) 3 23 41
  4. Structure of nerve growth factor complexed with the shared neurotrophin receptor p75. (PMID: 15131306) He XL … Garcia KC (Science (New York, N.Y.) 2004) 3 4 23
  5. Crystal structure of nerve growth factor in complex with the ligand-binding domain of the TrkA receptor. (PMID: 10490030) Wiesmann C … de Vos AM (Nature 1999) 3 4 23

ExternalLinks

View latest publications for NGF gene in Mastermind

Products for NGF Gene

Sources for NGF Gene