Aliases for NFIA-AS2 Gene

Subcategory (RNA class) for NFIA-AS2 Gene

lncRNA

Number of RNA Genes sources:

3 / 17

Aliases for NFIA-AS2 Gene

  • NFIA Antisense RNA 2 2 3 5
  • NFIA-AS2 2 5 165
  • NONHSAG001657.2 91
  • HSALNG0004009 164

External Ids for NFIA-AS2 Gene

Summaries for NFIA-AS2 Gene

GeneCards Summary for NFIA-AS2 Gene

NFIA-AS2 (NFIA Antisense RNA 2) is an RNA Gene, and is affiliated with the lncRNA class.

Additional gene information for NFIA-AS2 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NFIA-AS2 Gene

Genomics for NFIA-AS2 Gene

GeneHancer (GH) Regulatory Elements Pubs

Promoters and enhancers for NFIA-AS2 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J060969 Promoter/Enhancer 1 EPDnew ENCODE 600.2 +86.4 86396 1.8 HNRNPL CTCF ZIC2 ZSCAN4 ZNF24 REST RAD21 ZFHX2 SMC3 RCOR1 NFIA-AS2 lnc-TM2D1-6 Hsa-Mir-95-P3-v2_3p-001 NFIA TM2D1
GH01J060954 Promoter 0.4 EPDnew 611.7 +104.0 104047 0.1 SMARCA4 NFIA-AS2 lnc-TM2D1-6 LOC105378764 NFIA TM2D1
GH01J061447 Enhancer 2.3 VISTA UCNEbase FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.7 -394.6 -394567 8 GATAD2A CTCF ATF7 PRDM10 ZNF629 RFX1 SOX13 NFKBIZ ZNF692 RCOR2 RNU6-1177P NFIA-AS2 NFIA ENSG00000284808 MN308946 NONHSAG001663.2 TM2D1
GH01J060867 Promoter/Enhancer 2.1 UCNEbase EPDnew Ensembl ENCODE CraniofacialAtlas dbSUPER 10.2 +190.2 190220 4.9 RNF2 ZNF629 POLR2A SP1 ZBTB44 CEBPB ZNF639 ZEB1 TSHZ1 ZSCAN29 ENSG00000231252 LOC101926964 NFIA NFIA-AS2 TM2D1
GH01J061587 Enhancer 1.4 VISTA Ensembl ENCODE CraniofacialAtlas 10.9 -532.6 -532596 3.4 CTCF TEAD4 PRDM10 ZNF512 PRDM1 ZSCAN4 MTA1 PATZ1 REST RAD21 ENSG00000287224 NFIA-AS2 RNU6-1177P HSALNG0004036 piR-59297-030 TM2D1 NFIA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NFIA-AS2 on the GeneHancer Hub at the UCSC Golden Path

Genomic Locations for NFIA-AS2 Gene

Genomic Locations for NFIA-AS2 Gene
chr1:60,912,675-61,056,885
(GRCh38/hg38)
Size:
144,211 bases
Orientation:
Minus strand
chr1:61,405,911-61,436,448
(GRCh37/hg19)
Size:
30,538 bases
Orientation:
Minus strand

Genomic View for NFIA-AS2 Gene

Genes around NFIA-AS2 on UCSC Golden Path with GeneCards custom track
NFIA-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Cytogenetic band:
NFIA-AS2 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NFIA-AS2 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NFIA-AS2 Gene

Proteins for NFIA-AS2 Gene

Post-translational modifications for NFIA-AS2 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NFIA-AS2 Gene

Domains & Families for NFIA-AS2 Gene

Gene Families for NFIA-AS2 Gene

genes like me logo Genes that share domains with NFIA-AS2: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NFIA-AS2 Gene

Function for NFIA-AS2 Gene

Phenotypes From GWAS Catalog for NFIA-AS2 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NFIA-AS2 Gene

Localization for NFIA-AS2 Gene

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from COMPARTMENTS , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NFIA-AS2 Gene

Pathways & Interactions for NFIA-AS2 Gene

PathCards logo

SuperPathways for NFIA-AS2 Gene

No Data Available

Gene Ontology (GO) - Biological Process for NFIA-AS2 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NFIA-AS2 Gene

Drugs & Compounds for NFIA-AS2 Gene

No Compound Related Data Available

Transcripts for NFIA-AS2 Gene

Non-coding RNA (ncRNA) Transcripts from RNAcentral for NFIA-AS2 Gene

RNAcentral Transcript ID Subcategory Length (nts) # of Sources Source Identifiers and Annotations
URS00005B8C7C_9606 lncRNA 649 4

Ensembl: ENST00000418662 (view in UCSC) ,

LncBook: HSALNT0007897,

LNCipedia: NFIA-AS2:5,

NONCODE: NONHSAT003595.2,

URS000028072A_9606 lncRNA 1275 3

Ensembl: ENST00000438559 (view in UCSC) ,

LNCipedia: NFIA-AS2:1,

NONCODE: NONHSAT003593.2,

URS000075A6D8_9606 lncRNA 1270 2

HGNC: 40401,

RefSeq: NR_110617,

URS0000EF41A7_9606 lncRNA 4256 1

Ensembl: ENST00000665665 (view in UCSC) ,

URS0000EEC6B2_9606 lncRNA 2947 1

Ensembl: ENST00000421455 (view in UCSC) ,

NFIA-AS2 in the GeneCards ncRNA compendium hub on the UCSC Golden Path

Additional transcripts not in RNAcentral for NFIA-AS2 Gene

3 NCBI additional mRNA sequence :

Alternative Splicing Database (ASD) splice patterns (SP) for NFIA-AS2 Gene

No ASD Table

Relevant External Links for NFIA-AS2 Gene

GeneLoc Exon Structure for
NFIA-AS2

Expression for NFIA-AS2 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NFIA-AS2 Gene

Transcriptomic regulation report from SPP (The Signaling Pathways Project) for NFIA-AS2

genes like me logo Genes that share expression patterns with NFIA-AS2: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NFIA-AS2 Gene

Orthologs for NFIA-AS2 Gene

Evolution for NFIA-AS2 Gene

ENSEMBL:
Gene Tree for NFIA-AS2 (if available)
TreeFam:
Gene Tree for NFIA-AS2 (if available)

No data available for Orthologs for NFIA-AS2 Gene

Paralogs for NFIA-AS2 Gene

No data available for Paralogs for NFIA-AS2 Gene

Variants for NFIA-AS2 Gene

Additional dbSNP identifiers (rs#s) for NFIA-AS2 Gene

Structural Variations from Database of Genomic Variants (DGV) for NFIA-AS2 Gene

Variant ID Type Subtype PubMed ID
nsv1012657 CNV gain 25217958

Additional Variant Information for NFIA-AS2 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NFIA-AS2

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for NFIA-AS2 Gene

Disorders for NFIA-AS2 Gene

No disorders were found for NFIA-AS2 Gene.

No data available for MalaCards , UniProtKB/Swiss-Prot and Genatlas for NFIA-AS2 Gene

Publications for NFIA-AS2 Gene

  1. Genome-wide association study identifies three novel genetic markers associated with elite endurance performance. (PMID: 25729143) Ahmetov I … Govorun V (Biology of sport 2015) 3
  2. Diversification of transcriptional modulation: large-scale identification and characterization of putative alternative promoters of human genes. (PMID: 16344560) Kimura K … Sugano S (Genome research 2006) 3

Products for NFIA-AS2 Gene

Sources for NFIA-AS2 Gene