Aliases for NFIA-AS1 Gene

Subcategory (RNA class) for NFIA-AS1 Gene

lncRNA

Number of RNA Genes sources:

3 / 14

Aliases for NFIA-AS1 Gene

  • NFIA Antisense RNA 1 2 3 5
  • NFIA-AS1 2 168
  • HSALNG0004023 167
  • NONHSAG001661 92
  • RP5-833A20.1 3

External Ids for NFIA-AS1 Gene

Summaries for NFIA-AS1 Gene

GeneCards Summary for NFIA-AS1 Gene

NFIA-AS1 (NFIA Antisense RNA 1) is an RNA Gene, and is affiliated with the lncRNA class. Diseases associated with NFIA-AS1 include Atherosclerosis Susceptibility and Malignant Glioma.

Additional gene information for NFIA-AS1 Gene

No data available for Entrez Gene Summary , CIViC Summary , UniProtKB/Swiss-Prot Summary , Tocris Summary , Gene Wiki entry , PharmGKB "VIP" Summary , Rfam classification and piRNA Summary for NFIA-AS1 Gene

Genomics for NFIA-AS1 Gene

GeneHancer (GH) Regulatory Elements for NFIA-AS1 Gene

Promoters and enhancers for NFIA-AS1 Gene
GeneHancer (GH) Identifier GH Type GH
Score
GH Sources Gene Association Score Total Score TSS distance (kb) Number of Genes Away Size (kb) Transcription Factor
Binding Sites
Gene Targets
GH01J061253 Promoter/Enhancer 1.7 Ensembl ENCODE CraniofacialAtlas dbSUPER 500.7 +0.7 709 3.2 ZSCAN5C USF1 ZNF639 POLR2A TARDBP MYC EP300 CTBP1 ATF2 TAF9B NFIA-AS1 ENSG00000271200 lnc-PATJ-2 NFIA
GH01J061256 Enhancer 0.3 dbSUPER 500.7 -1.6 -1623 1.1 ZNF777 ZNF362 NFIA-AS1 lnc-PATJ-6 NFIA
GH01J061076 Promoter/Enhancer 2.7 EPDnew FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 10.3 +173.9 173902 11.2 FOXK2 CTCF ZSCAN5C NRF1 MYC TCF12 ZNF300 POLR2G USF1 SP1 NFIA HSALNG0004017 ENSG00000271200 NFIA-AS1 NONHSAG001659.2
GH01J061048 Promoter/Enhancer 2.4 FANTOM5 Ensembl ENCODE CraniofacialAtlas dbSUPER 11 +201.5 201523 9.6 HNRNPK EP300 CTCF NRF1 TCF12 USF1 GTF2E2 PHF8 TEAD4 PHB2 NFIA-AS1 TM2D1 NFIA NFIA-AS2 lnc-TM2D1-6
GH01J061299 Enhancer 1.3 FANTOM5 Ensembl ENCODE dbSUPER 11.3 -45.6 -45643 5.1 ZSCAN5C USF1 KDM6A TEAD1 TBX3 FOXA2 FOS SAP130 NR2F2 NR3C1 NFIA-AS1 NFIA-AS2 lnc-PATJ-6 piR-56692-001 NFIA
- Elite GeneHancer and/or Elite GeneHancer-gene association Download GeneHancer data from 2017 publication | Request up-to-date GeneHancer data (full dataset)

GeneHancers around NFIA-AS1 on UCSC Golden Path with GeneCards custom track

Genomic Locations for NFIA-AS1 Gene

Genomic Locations for NFIA-AS1 Gene
chr1:61,247,717-61,255,303
(GRCh38/hg38)
Size:
7,587 bases
Orientation:
Minus strand
chr1:61,714,617-61,719,182
(GRCh37/hg19)
Size:
4,566 bases
Orientation:
Minus strand

Genomic View for NFIA-AS1 Gene

Genes around NFIA-AS1 on UCSC Golden Path with GeneCards custom track

Cytogenetic band:
NFIA-AS1 Gene in genomic location: bands according to Ensembl, locations according to GeneLoc (and/or Entrez Gene and/or Ensembl if different)
Genomic Location for NFIA-AS1 Gene
GeneLoc Logo Genomic Neighborhood Exon StructureGene Density

RefSeq DNA sequence for NFIA-AS1 Gene

Proteins for NFIA-AS1 Gene

Post-translational modifications for NFIA-AS1 Gene

No Post-translational modifications

No data available for DME Specific Peptides for NFIA-AS1 Gene

Domains & Families for NFIA-AS1 Gene

Gene Families for NFIA-AS1 Gene

genes like me logo Genes that share domains with NFIA-AS1: view

No data available for Protein Domains , Suggested Antigen Peptide Sequences , Graphical View of Domain Structure and UniProtKB/Swiss-Prot for NFIA-AS1 Gene

Function for NFIA-AS1 Gene

Phenotypes From GWAS Catalog for NFIA-AS1 Gene

No data available for Molecular function , Enzyme Numbers (IUBMB) , Gene Ontology (GO) - Molecular Function , Phenotypes , Human Phenotype Ontology , Animal Models , miRNA , Transcription Factor Targets and HOMER Transcription for NFIA-AS1 Gene

Localization for NFIA-AS1 Gene

Subcellular locations from

COMPARTMENTS
Extracellular space Cytosol Plasma membrane Cytoskeleton Lysosome Endosome Peroxisome ER Golgi Apparatus Nucleus Mitochondrion 0 1 2 3 4 5 Confidence
COMPARTMENTS Subcellular localization image for NFIA-AS1 gene
Compartment Confidence
extracellular 1
nucleus 1

No data available for Subcellular locations from UniProtKB/Swiss-Prot , Subcellular locations from the Human Protein Atlas (HPA) and Gene Ontology (GO) - Cellular Components for NFIA-AS1 Gene

Pathways & Interactions for NFIA-AS1 Gene

PathCards logo

SuperPathways for NFIA-AS1 Gene

No Data Available
;

Gene Ontology (GO) - Biological Process for NFIA-AS1 Gene

None

No data available for Pathways by source , Interacting Proteins and SIGNOR curated interactions for NFIA-AS1 Gene

Drugs & Compounds for NFIA-AS1 Gene

No Compound Related Data Available

Transcripts for NFIA-AS1 Gene

mRNA/cDNA for NFIA-AS1 Gene

15 RNACentral transcripts :
1 REFSEQ mRNAs :
2 NCBI additional mRNA sequence :
7 Ensembl transcripts including schematic representations, and UCSC links to gene/alias where relevant :
8 NONCODE transcripts :
11 LncBook transcripts :
13 LNCipedia transcripts :

Alternative Splicing Database (ASD) splice patterns (SP) for NFIA-AS1 Gene

No ASD Table

Relevant External Links for NFIA-AS1 Gene

GeneLoc Exon Structure for
NFIA-AS1

Expression for NFIA-AS1 Gene

mRNA expression in normal human tissues from GTEx, Illumina, BioGPS, and SAGE for NFIA-AS1 Gene

genes like me logo Genes that share expression patterns with NFIA-AS1: view

No data available for mRNA expression in embryonic tissues and stem cells from LifeMap Discovery , mRNA differential expression in normal tissues , Protein differential expression in normal tissues , Protein expression , Protein tissue co-expression partners , mRNA Expression by UniProt/SwissProt , Evidence on tissue expression from TISSUES and Phenotype-based relationships between genes and organs from Gene ORGANizer for NFIA-AS1 Gene

Orthologs for NFIA-AS1 Gene

Evolution for NFIA-AS1 Gene

ENSEMBL:
Gene Tree for NFIA-AS1 (if available)
TreeFam:
Gene Tree for NFIA-AS1 (if available)

No data available for Orthologs for NFIA-AS1 Gene

Paralogs for NFIA-AS1 Gene

No data available for Paralogs for NFIA-AS1 Gene

Variants for NFIA-AS1 Gene

Additional dbSNP identifiers (rs#s) for NFIA-AS1 Gene

Structural Variations from Database of Genomic Variants (DGV) for NFIA-AS1 Gene

Variant ID Type Subtype PubMed ID
nsv1010797 CNV gain 25217958
nsv1012657 CNV gain 25217958

Additional Variant Information for NFIA-AS1 Gene

SNPedia medical, phenotypic, and genealogical associations of SNPs for
NFIA-AS1

No data available for Polymorphic Variants from UniProtKB/Swiss-Prot , Sequence variations, with clinical significance, from ClinVar and Humsavar, with links to dbSNP and Variation tolerance for NFIA-AS1 Gene

Disorders for NFIA-AS1 Gene

MalaCards: The human disease database

(2) MalaCards diseases for NFIA-AS1 Gene - From: LncRNADisease and DISEASES

Disorder Aliases PubMed IDs
atherosclerosis susceptibility
  • aths
malignant glioma
  • glial cell tumor
- elite association - COSMIC cancer census association via MalaCards

Additional Disease Information for NFIA-AS1

genes like me logo Genes that share disorders with NFIA-AS1: view

No data available for UniProtKB/Swiss-Prot and Genatlas for NFIA-AS1 Gene

Publications for NFIA-AS1 Gene

  1. Long non-coding RNA RP5-833A20.1 inhibits proliferation, metastasis and cell cycle progression by suppressing the expression of NFIA in U251 cells. (PMID: 27779670) Kang CM … Qiu YR (Molecular medicine reports 2016) 2 3 54
  2. RP5-833A20.1/miR-382-5p/NFIA-dependent signal transduction pathway contributes to the regulation of cholesterol homeostasis and inflammatory reaction. (PMID: 25265644) Hu YW … Wang Q (Arteriosclerosis, thrombosis, and vascular biology 2015) 2 3 54
  3. MicroRNA and LncRNA Expression Profiles in Human Estrogen Receptor Positive Breast Cancer. (PMID: 30775882) Shao X … Zheng Y (Clinical laboratory 2019) 3 54
  4. Complete sequencing and characterization of 21,243 full-length human cDNAs. (PMID: 14702039) Ota T … Sugano S (Nature genetics 2004) 3 54

Products for NFIA-AS1 Gene

Sources for NFIA-AS1 Gene